RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 TMCO2Q7Z6W1 182 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 THG1LQ9NWX6 298 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 P2RX2Q9UBL9 471 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF510Q9Y2H8 683 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 PARP4Q9UKK3 1724 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 LOC100509620A0A075B734 347 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 NEDD8-MDP1E9PL57 170 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 KIAA0513O60268 411 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ATXN1P54253 815 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 DCUN1D3Q8IWE4 304 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 EID2Q8N6I1 236 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ADAMTS16Q8TE57 1224 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TMEM98Q9Y2Y6 226 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 PCDHB5Q9Y5E4 795 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TMEM14AQ9Y6G1 99 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 OR6C65A6NJZ3 312 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TUBG1P23258 451 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 PTGER3P43115 390 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ARHGAP1Q07960 439 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 DOK6Q6PKX4 331 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 RAVER1Q8IY67 606 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 GTPBP3Q969Y2 492 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 MASTLQ96GX5 879 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 MS4A12Q9NXJ0 267 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 EXTL2Q9UBQ6 330 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 NDRG3Q9UGV2 375 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ANKRD33BA6NCL7 494 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF670-ZNF695F2Z2N8 137 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TREHO43280 583 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 LALBAP00709 142 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 GLUD2P49448 558 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SPIN2AQ99865 258 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SPIN2BQ9BPZ2 258 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TMEM181Q9P2C4 612 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 DERAQ9Y315 318 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 GGT3PA6NGU5 568 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 GGT2P36268 569 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 CAV3P56539 151 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 MPPE1Q53F39 396 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 MBLAC2Q68D91 279 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 PEX13Q92968 403 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 IL4I1Q96RQ9 567 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ABCG4Q9H172 646 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 DUOX1Q9NRD9 1551 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 E5RJQ4 531 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 FAAHO00519 579 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SULT1C4O75897 302 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 BRCC3P46736 316 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 MYLIPQ8WY64 445 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 FAM84BQ96KN1 310 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 B3GNT4Q9C0J1 378 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 CDT1Q9H211 546 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF175Q9Y473 711 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 PHYHO14832 338 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SEC14L5O43304 696 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 HTR1EP28566 365 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SLC29A1Q99808 456 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SNRNP25Q9BV90 132 aaKnown RBP12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ATG5Q9H1Y0 275 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 WDR26Q9H7D7 661 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 SGK2Q9HBY8 427 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 DNAJC5BQ9UF47 199 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 H0YGN5 161 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TOR1AO14656 332 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 TOX4O94842 621 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 AHSA1O95433 338 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 CSF1RP07333 972 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 RNF128Q8TEB7 428 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 NFS1Q9Y697 457 aa12.26□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF487B1APH4 448 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 EEF1E1O43324 174 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 NDST3O95803 873 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 PNPP00491 289 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CD81P60033 236 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 EFEMP1Q12805 493 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SCARB2Q14108 478 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 UAP1L1Q3KQV9 507 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 EEPD1Q7L9B9 569 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 TMED4Q7Z7H5 227 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 LRRC28Q86X40 367 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ASB8Q9H765 288 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 KNTC1P50748 2209 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CKMT2P17540 419 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 ZNF676Q8N7Q3 588 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 SMARCD2Q92925 531 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MOCS1Q9NZB8 636 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 PLEKHM1Q9Y4G2 1056 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 MN1Q10571 1320 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 OAS1P00973 400 aaKnown RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 FAM86B2P0C5J1 330 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 RXRBP28702 533 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CCND3P30281 292 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CDK3Q00526 305 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 BTN1A1Q13410 526 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 LRP8Q14114 963 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 IRAK1BP1Q5VVH5 260 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 GLT8D1Q68CQ7 371 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 LPCAT3Q6P1A2 487 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 CES3Q6UWW8 571 aa12.25□□□□□ -0.45
COL6A3-203ENST00000353578 OR52J3Q8NH60 311 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms