RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TFECO14948 347 aaPredicted RBP21.6■■□□□ 1.05
TRIM28-202ENST00000341753 WNT3P56703 355 aa21.6■■□□□ 1.05
TRIM28-202ENST00000341753 DDX39BQ13838 428 aaKnown RBP21.6■■□□□ 1.05
TRIM28-202ENST00000341753 DMC1Q14565 340 aa21.6■■□□□ 1.05
TRIM28-202ENST00000341753 MS4A12Q9NXJ0 267 aa21.6■■□□□ 1.05
TRIM28-202ENST00000341753 OR6C75A6NL08 312 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 TBKBP1A7MCY6 615 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 PRAMEF4O60810 478 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 CLDN7O95471 211 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 MZF1P28698 734 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-202ENST00000341753 C10orf62Q5T681 223 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-202ENST00000341753 PRAMEF9Q5VWM5 478 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 CERS6Q6ZMG9 384 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 SCLYQ96I15 445 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 CCM2Q9BSQ5 444 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 OR2B2Q9GZK3 357 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 SUV39H1O43463 412 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 ABCB1P08183 1280 aaPredicted RBP21.59■■□□□ 1.05
TRIM28-202ENST00000341753 ANXA5P08758 320 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 LAMP1P11279 417 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 AMD1P17707 334 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 GPX2P18283 190 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 RHOAP61586 193 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 ZFP69Q49AA0 526 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 ANGPTL8Q6UXH0 198 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 UBQLNLQ8IYU4 475 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 CHCHD4Q8N4Q1 142 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 OR10G2Q8NGC3 310 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 COL21A1Q96P44 957 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 SLC32A1Q9H598 525 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 FZD4Q9ULV1 537 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 A3GALT2U3KPV4 340 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 MICAL3Q7RTP6 2002 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 PIKFYVEQ9Y2I7 2098 aa21.59■■□□□ 1.05
TRIM28-202ENST00000341753 SLC11A2P49281 568 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 CSNK2BP67870 215 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 CHRNA6Q15825 494 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 ZNF544Q6NX49 715 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 CCDC190Q86UF4 302 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 B3GNT7Q8NFL0 401 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 OR9Q2Q8NGE9 314 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 RAET1EQ8TD07 263 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 UBTD2Q8WUN7 234 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 EPYCQ99645 322 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 TPT1P8Q9HAU6 139 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 EXOSC4Q9NPD3 245 aaKnown RBP21.58■■□□□ 1.05
TRIM28-202ENST00000341753 OGDHLQ9ULD0 1010 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 LRFN2Q9ULH4 789 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 E9PQ18 207 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 H3BM21 787 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 GALTP07902 379 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 SOX6P35712 828 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 PIK3CBP42338 1070 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 TGM4P49221 684 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 CDH12P55289 794 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 PPIGQ13427 754 aaKnown RBP eCLIP21.58■■□□□ 1.052e-8■□□□□ 10.8
TRIM28-202ENST00000341753 MADCAM1Q13477 382 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 TAB1Q15750 504 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 NEK5Q6P3R8 708 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 CMTM7Q96FZ5 175 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 BBS2Q9BXC9 721 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 LHX3Q9UBR4 397 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 SRRDQ9UH36 339 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 MKLN1Q9UL63 735 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 DUSP12Q9UNI6 340 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 PCDHGB3Q9Y5G1 929 aa21.58■■□□□ 1.05
TRIM28-202ENST00000341753 MN1Q10571 1320 aaPredicted RBP21.58■■□□□ 1.04
TRIM28-202ENST00000341753 SCN2BO60939 215 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CLDN11O75508 207 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 TNFSF8P32971 234 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ARMC12Q5T9G4 340 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 LHX8Q68G74 356 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 FAM217AQ8IXS0 508 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CACTIN-AS1Q8N1I8 211 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ASCC1Q8N9N2 400 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 OR2A14Q96R47 310 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 SLC30A2Q9BRI3 323 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 FKBP14Q9NWM8 211 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 SLC22A14Q9Y267 594 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CHD5Q8TDI0 1954 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 FAM172BPA6NC97 362 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ITGALP20701 1170 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ACRV1P26436 265 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 OR1D2P34982 312 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 SLX4IPQ5VYV7 408 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 VANGL1Q8TAA9 524 aaPredicted RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 POP5Q969H6 163 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 TRNT1Q96Q11 434 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ATG10Q9H0Y0 220 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 ZFYVE1Q9HBF4 777 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CCDC177Q9NQR7 707 aaPredicted RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 PLCXD1Q9NUJ7 323 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 IMPAD1Q9NX62 359 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 TAS2R9Q9NYW1 312 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 MUTYHQ9UIF7 546 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CFAP20Q9Y6A4 193 aaKnown RBP21.57■■□□□ 1.04
TRIM28-202ENST00000341753 KCNE1BA0A087WTH5 132 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 TMEM229AB2RXF0 380 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 SEMA3DO95025 777 aa21.57■■□□□ 1.04
TRIM28-202ENST00000341753 CORO1AP31146 461 aaKnown RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms