RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LHX1P48742 406 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TARDBPQ13148 414 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ZNF235Q14590 738 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 XKR4Q5GH76 650 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 LRIF1Q5T3J3 769 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 SAXO2Q658L1 398 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 KLHL17Q6TDP4 642 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CLECL1Q8IZS7 167 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CFAP52Q8N1V2 620 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 VWA5B2Q8N398 1253 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TADA1Q96BN2 335 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 C7orf34Q96L11 122 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 CSNK1G1Q9HCP0 422 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 HHATLQ9HCP6 504 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 EVA1BQ9NVM1 165 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 NLE1Q9NVX2 485 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 RWDD3Q9Y3V2 267 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 POLR2CP19387 275 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 RPS5P46782 204 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PSPHP78330 225 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 FBXO43Q4G163 708 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ESCO2Q56NI9 601 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 MS4A13Q5J8X5 152 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 MIB1Q86YT6 1006 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 RDH10Q8IZV5 341 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PPTC7Q8NI37 304 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 SPPL2AQ8TCT8 520 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 GPR152Q8TDT2 470 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 IL4I1Q96RQ9 567 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TTLL2Q9BWV7 592 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ACPTQ9BZG2 426 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 POLR1EQ9GZS1 481 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 FAM83DQ9H4H8 585 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PLCXD1Q9NUJ7 323 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 IMPAD1Q9NX62 359 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ZMAT5Q9UDW3 170 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 PCDHGC4Q9Y5F7 938 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 TNPO3Q9Y5L0 923 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 ALG5Q9Y673 324 aa12.99□□□□□ -0.33
CCDC88C-201ENST00000331194 F8W810 466 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PLD2O14939 933 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 ARHGEF9O43307 516 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CTRB1P17538 263 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 GABRB1P18505 474 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 HLA-DPA1P20036 260 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 POU1F1P28069 291 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 ERP29P30040 261 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CAV3P56539 151 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PCBP2Q15366 365 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CTRB2Q6GPI1 263 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PAQR6Q6TCH4 344 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 IDO2Q6ZQW0 420 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CCDC149Q6ZUS6 474 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 TEX26Q8N6G2 289 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 LSM14AQ8ND56 463 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 OR10T2Q8NGX3 314 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 DIRAS2Q96HU8 199 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 OPALINQ96PE5 141 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 RAD9AQ99638 391 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 GABARAPL3Q9BY60 117 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 MIXL1Q9H2W2 232 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 ABCC13Q9NSE7 274 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PCDHGA2Q9Y5H1 932 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PTCH2Q9Y6C5 1203 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 DOCK3Q8IZD9 2030 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 FABP12A6NFH5 140 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 E9PQ18 207 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 J3KTA2 159 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 TNFRSF11BO00300 401 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 MANBAO00462 879 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 HOXB9P17482 250 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 MAPK12P53778 367 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 ITGA1P56199 1179 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PYDC2Q56P42 97 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 FBXL22Q6P050 247 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 BCDIN3DQ7Z5W3 292 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 SCN4BQ8IWT1 228 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 TIGD4Q8IY51 512 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CLDN19Q8N6F1 224 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 OR8H1Q8NGG4 311 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 TBC1D20Q96BZ9 403 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 PANX1Q96RD7 426 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 ZYG11BQ9C0D3 744 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 HCN4Q9Y3Q4 1203 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 LOC285556D6RIA3 1793 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 CCDC88CQ9P219 2028 aa12.98□□□□□ -0.33
CCDC88C-201ENST00000331194 DOCK4Q8N1I0 1966 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 A0A075B6Q4 140 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 A0A1W2PQL4 384 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 YY2O15391 372 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 SH3BGRLO75368 114 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 PDYNP01213 254 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CDH12P55289 794 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CSNK2BP67870 215 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 KCNJ10P78508 379 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 PPIGQ13427 754 aaKnown RBP eCLIP12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 CDH18Q13634 790 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 SLC35F1Q5T1Q4 408 aa12.97□□□□□ -0.33
CCDC88C-201ENST00000331194 AFTPHQ6ULP2 937 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms