RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 STYXQ8WUJ0 223 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 CPNE2Q96FN4 548 aaPredicted RBP10.15□□□□□ -0.78
VCL-201ENST00000211998 MGLLQ99685 303 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 RBCK1Q9BYM8 510 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 B3GNT4Q9C0J1 378 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 TRIM36Q9NQ86 728 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 DEC1Q9P2X7 70 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 CYTH4Q9UIA0 394 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 PCDHGA11Q9Y5H2 935 aa10.15□□□□□ -0.78
VCL-201ENST00000211998 PCDH17O14917 1159 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 DUSP11O75319 330 aaKnown RBP10.15□□□□□ -0.79
VCL-201ENST00000211998 NDST3O95803 873 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 SRCP12931 536 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 TAGLNQ01995 201 aaKnown RBP10.15□□□□□ -0.79
VCL-201ENST00000211998 CACNG1Q06432 222 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 DUSP4Q13115 394 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 C14orf80Q86SX3 495 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 IGDCC3Q8IVU1 814 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 EXOSC8Q96B26 276 aaKnown RBP10.15□□□□□ -0.79
VCL-201ENST00000211998 TFB2MQ9H5Q4 396 aaKnown RBP10.15□□□□□ -0.79
VCL-201ENST00000211998 TMEM181Q9P2C4 612 aa10.15□□□□□ -0.79
VCL-201ENST00000211998 TCHHQ07283 1943 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 MEIOCA2RUB1 952 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 OR6C74A6NCV1 312 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 ARL6IP5O75915 188 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CST3P01034 146 aaPredicted RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 PRNPP04156 253 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PRKCHP24723 683 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 RFC2P35250 354 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SPAM1P38567 509 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 RPIAP49247 311 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 ETV1P50549 477 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PPP1R3AQ16821 1122 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 MPP7Q5T2T1 576 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 C22orf42Q6IC83 251 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 RPS27LQ71UM5 84 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 SLC43A3Q8NBI5 491 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PKP4Q99569 1192 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 TCEAL7Q9BRU2 100 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CCDC86Q9H6F5 360 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 DTLQ9NZJ0 730 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 GIMAP2Q9UG22 337 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CD300AQ9UGN4 299 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 ENPP5Q9UJA9 477 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PCDHAC2Q9Y5I4 1007 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 VIRMAQ69YN4 1812 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 SOX14O95416 240 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CORO1AP31146 461 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 PTPN9P43378 593 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 RGS6P49758 472 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 APLP1P51693 650 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SF3B4Q15427 424 aaKnown RBP eCLIP10.14□□□□□ -0.797e-7■■■■□ 26.7
VCL-201ENST00000211998 NDUFAF5Q5TEU4 345 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 WASH2PQ6VEQ5 465 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 VTCN1Q7Z7D3 282 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 FAM110BQ8TC76 370 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 GEMIN6Q8WXD5 167 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 S100A16Q96FQ6 103 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 ARL5BQ96KC2 179 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 EIF5A2Q9GZV4 153 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 SIAEQ9HAT2 523 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 TMEM88BA6NKF7 163 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 KRT33AO76009 404 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 VIPP01282 170 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 TACR2P21452 398 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 ARL2P36404 184 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CASP3P42574 277 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SMSP52788 366 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 HMGCS1Q01581 520 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 HSPB3Q12988 150 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CHIT1Q13231 466 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 STK11Q15831 433 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PLPP4Q5VZY2 271 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SLAIN1Q8ND83 568 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 OR2T35Q8NGX2 323 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SLC22A8Q8TCC7 542 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CASTOR1Q8WTX7 329 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 DEFB118Q96PH6 123 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 PDZD7Q9H5P4 517 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 ACSL5Q9ULC5 683 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 TMEM5Q9Y2B1 443 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 HIF3AQ9Y2N7 669 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 AGAP5A6NIR3 686 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 VILLO15195 856 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 IFNA21P01568 189 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 STSP08842 583 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 EDNRAP25101 427 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 HOXD13P35453 343 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 HNRNPDQ14103 355 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 LRP8Q14114 963 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 BATFQ16520 125 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 DPY19L1Q2PZI1 675 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 NANOGP8Q6NSW7 305 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 CARM1Q86X55 608 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 SIMC1Q8NDZ2 872 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 FBXO22Q8NEZ5 403 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 NEIL3Q8TAT5 605 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 C2orf15Q8WU43 125 aaKnown RBP10.14□□□□□ -0.79
VCL-201ENST00000211998 FCAMRQ8WWV6 532 aa10.14□□□□□ -0.79
VCL-201ENST00000211998 NDRG1Q92597 394 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms