RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 KRT20P35900 424 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 PXNP49023 591 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ST13P50502 369 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 CSNK2BP67870 215 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 NPRL3Q12980 569 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ATP1A4Q13733 1029 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 PDE12Q6L8Q7 609 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 AGTRAPQ6RW13 159 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 Q6ZVU0 165 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ANKRD33Q7Z3H0 272 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 TRAM1L1Q8N609 369 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ATG16L2Q8NAA4 619 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 OR2A12Q8NGT7 310 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 CHTF18Q8WVB6 975 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 OR4K3Q96R72 315 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 MTERF1Q99551 399 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 SLC46A2Q9BY10 475 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 PCDH12Q9NPG4 1184 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 SIRT5Q9NXA8 310 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 KIF17Q9P2E2 1029 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 STOX2Q9P2F5 926 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 AASSQ9UDR5 926 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 TSPAN11A1L157 253 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 UPK3BL1B0FP48 263 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 UPK3BL2E5RIL1 263 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 KPNA4O00629 521 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ZSCAN9O15535 394 aaPredicted RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 TGM5O43548 720 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 WBP4O75554 376 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 GRK3P35626 688 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 RPP38P78345 283 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 IL1RL1Q01638 556 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 CREMQ03060 361 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 LRRC74AQ0VAA2 488 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 FADDQ13158 208 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 OXA1LQ15070 435 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 HENMT1Q5T8I9 393 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 CPTPQ5TA50 214 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 MFSD4AQ8N468 514 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ZNF540Q8NDQ6 660 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 OR56A3Q8NH54 315 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 NDNFQ8TB73 568 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 DYNC2LI1Q8TCX1 351 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ZFP90Q8TF47 636 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 PHF10Q8WUB8 498 aaKnown RBP12.32□□□□□ -0.44
LINC00540-203ENST00000631321 GLMNQ92990 594 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 ITFG2Q969R8 447 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 MROQ9BYG7 248 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 RAD18Q9NS91 495 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 FZD4Q9ULV1 537 aa12.32□□□□□ -0.44
LINC00540-203ENST00000631321 A0A1W2PRU2 124 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 OR2A25A4D2G3 310 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 TMEM202A6NGA9 273 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 BOLA2-SMG1P6H3BVE0 249 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 MAN1A2O60476 641 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 FAM20BO75063 409 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 ETHE1O95571 254 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 PABPC1P11940 636 aaKnown RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 IDSP22304 550 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 NAE1Q13564 534 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 RGNQ15493 299 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SMN1Q16637 294 aaKnown RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 DGUOKQ16854 277 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 UBE2UQ5VVX9 321 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 EGFLAMQ63HQ2 1017 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 NPAS3Q8IXF0 933 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 VPS37AQ8NEZ2 397 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 APH1BQ8WW43 257 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 CXorf40BQ96DE9 158 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 HRASLS5Q96KN8 279 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 ALPK1Q96QP1 1244 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 BTBD2Q9BX70 525 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SGK2Q9HBY8 427 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 ADPRHL2Q9NX46 363 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 PCDHGB3Q9Y5G1 929 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SLC5A10A0PJK1 596 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 M0R3G1 203 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 RNASET2O00584 256 aaKnown RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 NPC1O15118 1278 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SUV39H1O43463 412 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 PCDHGA12O60330 932 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 NUDT7P0C024 238 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 HPCAL1P37235 193 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 RXRGP48443 463 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 GAB1Q13480 694 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 CAMK2GQ13555 558 aaPredicted RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 DMC1Q14565 340 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 HKDC1Q2TB90 917 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SPIN4Q56A73 249 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 MLIPQ5VWP3 458 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 Q6ZVL8 140 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 TSEN54Q7Z6J9 526 aaKnown RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 FAM124AQ86V42 546 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 TMEM25Q86YD3 366 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 C1orf52Q8N6N3 182 aaKnown RBP12.31□□□□□ -0.44
LINC00540-203ENST00000631321 RHNO1Q9BSD3 238 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 DOHHQ9BU89 302 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 ZSCAN5AQ9BUG6 496 aa12.31□□□□□ -0.44
LINC00540-203ENST00000631321 SMG9Q9H0W8 520 aaKnown RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms