RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 PRICKLE2Q7Z3G6 844 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 ADAMTSL2Q86TH1 951 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 TRIM73Q86UV7 250 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 TRIM42Q8IWZ5 723 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 SYTL1Q8IYJ3 562 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 DNAJC22Q8N4W6 341 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 OR2L8Q8NGY9 312 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 RAB3IL1Q8TBN0 382 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 STAG3L4Q8TBR4 150 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 DLG3Q92796 817 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 MOCOSQ96EN8 888 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 TMEM237Q96Q45 408 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 MENTQ9BUN1 341 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 KLHL25Q9H0H3 589 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 EPN3Q9H201 632 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 ZNF395Q9H8N7 513 aaPredicted RBP12.13□□□□□ -0.47
PNKP-217ENST00000625216 INTS7Q9NVH2 962 aaKnown RBP12.13□□□□□ -0.47
PNKP-217ENST00000625216 FGFR1OP2Q9NVK5 253 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 ANAPC2Q9UJX6 822 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 PLAGL1Q9UM63 463 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 PLCL2Q9UPR0 1127 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 MAN2B2Q9Y2E5 1009 aa12.13□□□□□ -0.47
PNKP-217ENST00000625216 CCDC189A1A4V9 331 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 H3BMH7 237 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 ITM2AO43736 263 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 TRIM13O60858 407 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 EDF1O60869 148 aaKnown RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 SNNO75324 88 aaPredicted RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 LYPLA1O75608 230 aaPredicted RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 OR2B3O76000 313 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 C1orf105O95561 183 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 VIMP08670 466 aaKnown RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 PEBP1P30086 187 aaKnown RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 GABRA4P48169 554 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 PRKAA2P54646 552 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 OCRLQ01968 901 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 GRB7Q14451 532 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 TERF2Q15554 542 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 ZIC1Q15915 447 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 PHKG1Q16816 387 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 RHBDD2Q6NTF9 364 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 TCTN3Q6NUS6 607 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 NEK10Q6ZWH5 1172 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 PTGR2Q8N8N7 351 aaPredicted RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 LINC01555Q8NAE3 123 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 HMGCLL1Q8TB92 370 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 PROKR1Q8TCW9 393 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 SKA2Q8WVK7 121 aaPredicted RBP12.12□□□□□ -0.47
PNKP-217ENST00000625216 ZUFSPQ96AP4 578 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 C20orf27Q9GZN8 174 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 FAM107BQ9H098 131 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 NUDT4Q9NZJ9 180 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 TCFL5Q9UL49 500 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 SRPK3Q9UPE1 567 aa12.12□□□□□ -0.47
PNKP-217ENST00000625216 LRRC14BA6NHZ5 514 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 C9J4A7 227 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 KLK8O60259 260 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 SMIM24O75264 130 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 IPO13O94829 963 aaKnown RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 WISP1O95388 367 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 MATN4O95460 622 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 CAPN1P07384 714 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 DNAJB13P59910 316 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 STX3Q13277 289 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 TGFBIQ15582 683 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 SF1Q15637 639 aaKnown RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 LACTB2Q53H82 288 aaPredicted RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 ZC3H12BQ5HYM0 836 aaKnown RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 ATG16L1Q676U5 607 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 FRA10AC1Q70Z53 315 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 GPSM1Q86YR5 675 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 ENDOVQ8N8Q3 282 aaKnown RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 LMNTD1Q8N9Z9 388 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 PPP1R14CQ8TAE6 165 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 PHF21BQ96EK2 531 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 SORT1Q99523 831 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 SPRTNQ9H040 489 aaPredicted RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 ENAMQ9NRM1 1142 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 UTP6Q9NYH9 597 aaKnown RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.11□□□□□ -0.47
PNKP-217ENST00000625216 SPATA7Q9P0W8 599 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 SNX7Q9UNH6 387 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 PADI2Q9Y2J8 665 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 OARD1Q9Y530 152 aa12.11□□□□□ -0.47
PNKP-217ENST00000625216 BSNQ9UPA5 3926 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NCF1BA6NI72 391 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 SYCE1LA8MT33 242 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NCF1CA8MVU1 366 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 TMEM114B3SHH9 223 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ZSCAN9O15535 394 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 PRICKLE3O43900 615 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 H2AFYO75367 372 aaKnown RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 SIX3O95343 332 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 C8GP07360 202 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 GFAPP14136 432 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NCF1P14598 390 aaPredicted RBP12.1□□□□□ -0.47
PNKP-217ENST00000625216 MAGP20916 626 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 BDKRB1P46663 353 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 ARSFP54793 590 aa12.1□□□□□ -0.47
PNKP-217ENST00000625216 NAGLUP54802 743 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms