RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ACAD11Q709F0 780 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 ZNF534Q76KX8 674 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PEX26Q7Z412 305 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 ADCK2Q7Z695 626 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PAQR7Q86WK9 346 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 ZC3H7AQ8IWR0 971 aaKnown RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 ZNF295-AS1Q8N0V1 137 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 CLYBLQ8N0X4 340 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 OR4N4Q8N0Y3 316 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 C2orf73Q8N5S3 287 aaPredicted RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 TBC1D19Q8N5T2 526 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 OTUD6BQ8N6M0 293 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 CCDC89Q8N998 374 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PLPP7Q8NBV4 271 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 CAMKVQ8NCB2 501 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 FBXO15Q8NCQ5 510 aaPredicted RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 SCMH1Q96GD3 660 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PDLIM2Q96JY6 352 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 OR2A5Q96R48 311 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 OR1F2PQ96R84 312 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 CYTH2Q99418 400 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 NRTNQ99748 197 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 TREX2Q9BQ50 279 aaPredicted RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 C10orf88Q9H8K7 445 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 ANKHQ9HCJ1 492 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 MMP25Q9NPA2 562 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 EIF2B3Q9NR50 452 aaKnown RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 BFARQ9NZS9 450 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 CCDC88CQ9P219 2028 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PAK5Q9P286 719 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 KCNN3Q9UGI6 736 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 TINAGQ9UJW2 476 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 AMFRQ9UKV5 643 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 PPT2Q9UMR5 302 aa5.95□□□□□ -1.46
CUX1-220ENST00000607092 SNRNP200O75643 2136 aaKnown RBP5.95□□□□□ -1.46
CUX1-220ENST00000607092 A0A0A6YYC8 382 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 PABPN1LA6NDY0 278 aaKnown RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 OR51F1A6NGY5 319 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 E5RI56 91 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NPIPA5E9PKD4 350 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 KLRC4-KLRK1H3BQV0 150 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 I3L1I5 382 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 MYO1CO00159 1063 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 EIF3FO00303 357 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 FCHO1O14526 889 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NDC80O14777 642 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ZBTB14O43829 449 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PRMT3O60678 531 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PSIP1O75475 530 aaKnown RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 SEC24DO94855 1032 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 APRTP07741 180 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 SP1P08047 785 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 SLC35G6P0C7Q6 338 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 CHRM3P20309 590 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PTGS2P35354 604 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 CYB561P49447 251 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PNLIPRP1P54315 467 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PPP2R2AP63151 447 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 SARNPP82979 210 aaKnown RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 FOLH1Q04609 750 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ACTN3Q08043 901 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 TSTA3Q13630 321 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 TUBA3CQ13748 450 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 HERC3Q15034 1050 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NSDHLQ15738 373 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 BBS9Q3SYG4 887 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 CCDC38Q502W7 563 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ZNF425Q6IV72 752 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 FBXO42Q6P3S6 717 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ARHGAP11AQ6P4F7 1023 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 TUBA3EQ6PEY2 450 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NAPRTQ6XQN6 538 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 VRK3Q8IV63 474 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 LMNTD2Q8IXW0 634 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 BEST3Q8N1M1 668 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 TAB3Q8N5C8 712 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 AMER3Q8N944 861 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ACBD4Q8NC06 268 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 MDS2Q8NDY4 140 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 GABPB2Q8TAK5 448 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 SLC35B2Q8TB61 432 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ADAMTS18Q8TE60 1221 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 AGAP11Q8TF27 550 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NINJ1Q92982 152 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 SDCCAG3Q96C92 435 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 TRIM44Q96DX7 344 aaPredicted RBP5.94□□□□□ -1.46
CUX1-220ENST00000607092 TMEM121Q9BTD3 319 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 SARGQ9BW04 601 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ACAT2Q9BWD1 397 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 VN1R1Q9GZP7 353 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 P2RY12Q9H244 342 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 CCDC68Q9H2F9 335 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 GOLPH3Q9H4A6 298 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 KCNJ16Q9NPI9 418 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 RAB6BQ9NRW1 208 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 TMEM184CQ9NVA4 438 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 LRFN1Q9P244 771 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 PCYOX1Q9UHG3 505 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 NPIPA1Q9UND3 350 aa5.94□□□□□ -1.46
CUX1-220ENST00000607092 ZNF148Q9UQR1 794 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms