RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZDHHC12Q96GR4 267 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 C7orf26Q96N11 449 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 CCT8L2Q96SF2 557 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 PKP4Q99569 1192 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 HGH1Q9BTY7 390 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 C1QTNF3Q9BXJ4 246 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 WASH6PQ9NQA3 447 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 IMP3Q9NV31 184 aaKnown RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 MARCOQ9UEW3 520 aaPredicted RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 LNPEPQ9UIQ6 1025 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 PCTPQ9UKL6 214 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 PLAGL1Q9UM63 463 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 ASF1AQ9Y294 204 aa12.19□□□□□ -0.46
UPF1-208ENST00000600012 TDRKHQ9Y2W6 561 aaKnown RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 SPTAN1Q13813 2472 aaKnown RBP12.19□□□□□ -0.46
UPF1-208ENST00000600012 USP9YO00507 2555 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 OR52A4PA6NMU1 304 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 E2F3O00716 465 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 CCNT2O60583 730 aaKnown RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 RECKO95980 971 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FAM107AO95990 144 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 KITP10721 976 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FGF5P12034 268 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 IMPA1P29218 277 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 GDF5P43026 501 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 GABPB1Q06547 395 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 PRKG2Q13237 762 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ERV3-1Q14264 604 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 GRB7Q14451 532 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 PCBP2Q15366 365 aaKnown RBP eCLIP12.18□□□□□ -0.46
UPF1-208ENST00000600012 TERF2Q15554 542 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ZXDCQ2QGD7 858 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.18□□□□□ -0.46
UPF1-208ENST00000600012 CACHD1Q5VU97 1274 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ATCAYQ86WG3 371 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 PPP1R3BQ86XI6 285 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 CRLF3Q8IUI8 442 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 DCUN1D3Q8IWE4 304 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 TCAIMQ8N3R3 496 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FAM26EQ8N5C1 309 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ZNF781Q8N8C0 355 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 LMNTD1Q8N9Z9 388 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FBXO15Q8NCQ5 510 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 PPFIBP2Q8ND30 876 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 BCAS4Q8TDM0 211 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 TRPC4APQ8TEL6 797 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ZNF473Q8WTR7 871 aaKnown RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 KLHL6Q8WZ60 621 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 RSC1A1Q92681 617 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 MIB2Q96AX9 1013 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FBXL8Q96CD0 374 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 CXorf40BQ96DE9 158 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 CNDP1Q96KN2 507 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 IL17FQ96PD4 163 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 FERD3LQ96RJ6 166 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 ELAC2Q9BQ52 826 aaKnown RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 ATG10Q9H0Y0 220 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 SLC40A1Q9NP59 571 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 NPHS2Q9NP85 383 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 SEMA4BQ9NPR2 832 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 PNPOQ9NVS9 261 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 STOX2Q9P2F5 926 aaPredicted RBP12.18□□□□□ -0.46
UPF1-208ENST00000600012 EPHA6Q9UF33 1036 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 PCDHGA6Q9Y5G7 932 aa12.18□□□□□ -0.46
UPF1-208ENST00000600012 MYO1CO00159 1063 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 PPP6CO00743 305 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 NDUFAB1O14561 156 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 UBFD1O14562 309 aaKnown RBP12.17□□□□□ -0.46
UPF1-208ENST00000600012 KIF1CO43896 1103 aaKnown RBP12.17□□□□□ -0.46
UPF1-208ENST00000600012 KATNA1O75449 491 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CREG1O75629 220 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 STK16O75716 305 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 WDR47O94967 919 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CCNYL3P0C7X3 344 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 MTHFD1P11586 935 aaKnown RBP12.17□□□□□ -0.46
UPF1-208ENST00000600012 SERPINB5P36952 375 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 HALP42357 657 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 SLC6A12P48065 614 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CD97P48960 835 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 HNMTP50135 292 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CLCQ05315 142 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 DNASE1L3Q13609 305 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 GTF2H2Q13888 395 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 GPR18Q14330 331 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 RPE65Q16518 533 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 RBBP7Q16576 425 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 PTCHD3Q3KNS1 767 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CDKL4Q5MAI5 379 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 IRGCQ6NXR0 463 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 GTF2H2CQ6P1K8 395 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 AGTRAPQ6RW13 159 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 ASB18Q6ZVZ8 466 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 GOLGA7Q7Z5G4 137 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 CUZD1Q86UP6 607 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 TEX9Q8N6V9 391 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 TEX19Q8NA77 164 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 OR9A1PQ8NGU1 263 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 OR5K2Q8NHB8 316 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 PYCR2Q96C36 320 aa12.17□□□□□ -0.46
UPF1-208ENST00000600012 RNF31Q96EP0 1072 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms