RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SOX8P57073 446 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CSNK1G2P78368 415 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 GBX1Q14549 363 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 TMED2Q15363 201 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 KRT222Q8N1A0 295 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 BEND7Q8N7W2 519 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 GIMAP7Q8NHV1 300 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CD200R1Q8TD46 325 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 PANX3Q96QZ0 392 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 SLC30A3Q99726 388 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CCM2Q9BSQ5 444 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 KLHL25Q9H0H3 589 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CAB39LQ9H9S4 337 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 TAS2R13Q9NYV9 303 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 NDOR1Q9UHB4 597 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CDYLQ9Y232 598 aa13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CFAP20Q9Y6A4 193 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-218ENST00000598907 CCDC88CQ9P219 2028 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 A0A1W2PPM1 405 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 KLHL33A6NCF5 533 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 OR6C74A6NCV1 312 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 MGAT4DA6NG13 374 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 E7EQ34 232 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 KCNJ13O60928 360 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 VPS26AO75436 327 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 GPC4O75487 556 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 POP7O75817 140 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 MYZAPP0CAP1 466 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 STMN1P16949 149 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 CHRM3P20309 590 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 SERPINB8P50452 374 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 PGGT1BP53609 377 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 RAB10P61026 200 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 LTBQ06643 244 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 DMPKQ09013 629 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 USP10Q14694 798 aaKnown RBP13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 RPE65Q16518 533 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 PRAMEF13Q5VWM6 474 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 ZNF385CQ66K41 422 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 ZNF324BQ6AW86 544 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 UGT3A1Q6NUS8 523 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 IGFL2Q6UWQ7 119 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 CMC1Q7Z7K0 106 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TRABD2AQ86V40 505 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TMEM200AQ86VY9 491 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TRAPPC5Q8IUR0 188 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 OR2Y1Q8NGV0 311 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 OR2L2Q8NH16 312 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 ACMSDQ8TDX5 336 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TSPAN17Q96FV3 270 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 GPR21Q99679 349 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 SPOCK3Q9BQ16 436 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 DPH2Q9BQC3 489 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 NDC1Q9BTX1 674 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TSSK1BQ9BXA7 367 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 SNX15Q9NRS6 342 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 SEC14L3Q9UDX4 400 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 TINAGQ9UJW2 476 aa13.29□□□□□ -0.28
SHKBP1-218ENST00000598907 SLC5A10A0PJK1 596 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 FOXO6A8MYZ6 492 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 KPNA5O15131 536 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 RGS16O15492 202 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 CNOT3O75175 753 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 SYF2O95926 243 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 C2P06681 752 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 UMODP07911 640 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 SLC35E2BP0CK96 405 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 VCLP18206 1134 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 CRABP2P29373 138 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 CASP6P55212 293 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 FOXD4Q12950 439 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 C3AR1Q16581 482 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 AGBL2Q5U5Z8 902 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 WASH2PQ6VEQ5 465 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 NCCRP1Q6ZVX7 275 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 CCDC91Q7Z6B0 441 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 CHDHQ8NE62 594 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 TLCD1Q96CP7 247 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 UBXN10Q96LJ8 280 aa13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 IFT80Q9P2H3 777 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-218ENST00000598907 MAP1AP78559 2803 aaPredicted RBP13.27□□□□□ -0.28
SHKBP1-218ENST00000598907 DOCK10Q96BY6 2186 aa13.27□□□□□ -0.28
SHKBP1-218ENST00000598907 FAM221AA4D161 298 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 E5RI56 91 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 EIF3FO00303 357 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 LIN7AO14910 233 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 PHGDHO43175 533 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SLCO2B1O94956 709 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 TSPAN12O95859 305 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ZNF37AP17032 561 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 KRT15P19012 456 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 POLR2CP19387 275 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SAT1P21673 171 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 MST1P26927 711 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 TYK2P29597 1187 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 DNAJA1P31689 397 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SLC26A3P40879 764 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 CCNFP41002 786 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 IST1P53990 364 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SLC12A2P55011 1212 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms