RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PCBD2Q9H0N5 130 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 PARVBQ9HBI1 364 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 TAS2R13Q9NYV9 303 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 SVILO95425 2214 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 NOTCH2Q04721 2471 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 CENPEQ02224 2701 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 ITPR2Q14571 2701 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 CPAMD8Q8IZJ3 1885 aa15.22■□□□□ 0.03
CLN3-229ENST00000567963 JRKO75564 520 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 C8orf89P0DMQ9 161 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 GABRB3P28472 473 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 RGS4P49798 205 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 CSNK1G2P78368 415 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 CRYMQ14894 314 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 TMEM214Q6NUQ4 689 aaKnown RBP15.21■□□□□ 0.03
CLN3-229ENST00000567963 PAQR3Q6TCH7 311 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 PRSS41Q7RTY9 318 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 SHISA5Q8N114 240 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 METTL21AQ8WXB1 218 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 THAP11Q96EK4 314 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 MAGEB10Q96LZ2 347 aaPredicted RBP15.21■□□□□ 0.03
CLN3-229ENST00000567963 TAAR6Q96RI8 345 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 CYTH2Q99418 400 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 MACROD1Q9BQ69 325 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 ATG10Q9H0Y0 220 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 SH2B3Q9UQQ2 575 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 SCN3AQ9NY46 2000 aa15.21■□□□□ 0.03
CLN3-229ENST00000567963 FEZF1A0PJY2 475 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 SLC16A5O15375 505 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 LCMT2O60294 686 aaKnown RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 TTC4O95801 387 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 WDPCPO95876 746 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 F10P00742 488 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 AHSGP02765 367 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 UQCRHP07919 91 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CYC1P08574 325 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 STSP08842 583 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 BCL6P41182 706 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 SP140Q13342 867 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 PPP1R7Q15435 360 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 INAQ16352 499 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 AGTRAPQ6RW13 159 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 MBOAT1Q6ZNC8 495 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 C17orf64Q86WR6 236 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 PALM2Q8IXS6 379 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 OR51Q1Q8NH59 317 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 GABPB2Q8TAK5 448 aaPredicted RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 RNF32Q9H0A6 362 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLN3-229ENST00000567963 STMN3Q9NZ72 180 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 DIDO1Q9BTC0 2240 aaKnown RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 SCN2AQ99250 2005 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 GOLGA6L10A0A0M3HER8 536 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 BANF1O75531 89 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 NPPBP16860 134 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 IL1RNP18510 177 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CCND1P24385 295 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 XCR1P46094 333 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 TDGF1P3P51864 188 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CDKN2DP55273 166 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 PER3P56645 1201 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 DHX9Q08211 1270 aaKnown RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 NAE1Q13564 534 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 RBM20Q5T481 1227 aaKnown RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 HIBCHQ6NVY1 386 aaPredicted RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 LCTLQ6UWM7 567 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CPEB2Q7Z5Q1 589 aaKnown RBP15.2■□□□□ 0.02
CLN3-229ENST00000567963 CNTN4Q8IWV2 1026 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 MYO1HQ8N1T3 1032 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 SLC35F6Q8N357 371 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 KCT2Q8NC54 265 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CAMKVQ8NCB2 501 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 SGPP1Q9BX95 441 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 CROCCQ5TZA2 2017 aa15.2■□□□□ 0.02
CLN3-229ENST00000567963 IGHV3-20A0A0C4DH32 117 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 SGK494L7N484 410 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 CES2O00748 559 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 DNALI1O14645 258 aaPredicted RBP15.19■□□□□ 0.02
CLN3-229ENST00000567963 HIST1H2AGP0C0S8 130 aaPredicted RBP15.19■□□□□ 0.02
CLN3-229ENST00000567963 HIST1H2ADP20671 130 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 PHKG1Q16816 387 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 ZXDCQ2QGD7 858 aaPredicted RBP15.19■□□□□ 0.02
CLN3-229ENST00000567963 MINDY4Q4G0A6 757 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 MSS51Q4VC12 460 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 SPANXN3Q5MJ09 141 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 MFSD4BQ5TF39 518 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 ABHD17BQ5VST6 288 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 CAPN13Q6MZZ7 669 aaPredicted RBP15.19■□□□□ 0.02
CLN3-229ENST00000567963 KIAA0408Q6ZU52 694 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 LANCL3Q6ZV70 420 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 PCGF5Q86SE9 256 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 SLC26A11Q86WA9 606 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 SLC13A3Q8WWT9 602 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 NR4A3Q92570 626 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 ALKBH8Q96BT7 664 aaKnown RBP15.19■□□□□ 0.02
CLN3-229ENST00000567963 HIST1H2AHQ96KK5 128 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 HIST1H2AJQ99878 128 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 NAT9Q9BTE0 207 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 H2AFJQ9BTM1 129 aa15.19■□□□□ 0.02
CLN3-229ENST00000567963 FAM129AQ9BZQ8 928 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms