RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CAMK2GQ13555 558 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 DOC2AQ14183 400 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 HKDC1Q2TB90 917 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 INAVAQ3KP66 663 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SOWAHCQ53LP3 525 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 KIAA1614Q5VZ46 1190 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 METTL2BQ6P1Q9 378 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 Q6ZVU0 165 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 CADM3Q8N126 398 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OR6Q1Q8NGQ2 317 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OR52J3Q8NH60 311 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 DNAJB8Q8NHS0 232 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ELMO1Q92556 727 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 LGALS12Q96DT0 336 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 C7orf34Q96L11 122 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OR4K3Q96R72 315 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 LYSMD1Q96S90 227 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM121BQ9BXQ6 578 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SLIRPQ9GZT3 109 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RNF167Q9H6Y7 350 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 BRD9Q9H8M2 597 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 REEP1Q9H902 201 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RLIMQ9NVW2 624 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RAPGEFL1Q9UHV5 662 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 FZD4Q9ULV1 537 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 TESMINQ9Y4I5 508 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 CKAP5Q14008 2032 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 XIRP2A4UGR9 3374 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 IGLV3-16A0A075B6K0 115 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ARHGEF33A8MVX0 844 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 TTC34A8MYJ7 566 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 PCDH7O60245 1069 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OLFM2O95897 454 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 INHAP05111 366 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 C8GP07360 202 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 JUPP14923 745 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 MAPK1P28482 360 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 GRK5P34947 590 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SLC19A1P41440 591 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 PREPP48147 710 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SPINT3P49223 89 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ST13P50502 369 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RAB15P59190 212 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 POM121L1PQ3SYA9 428 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 COX20Q5RI15 118 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 C22orf39Q6P5X5 142 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ANGPTL8Q6UXH0 198 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 EIF3MQ7L2H7 374 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 PAGE2Q7Z2X7 111 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 HSD11B1LQ7Z5J1 315 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 FAM124AQ86V42 546 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 NAGSQ8N159 534 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SYNPOQ8N3V7 929 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 C1orf52Q8N6N3 182 aaKnown RBP7.24□□□□□ -1.25
LIMA1-213ENST00000552720 WDR20Q8TBZ3 569 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 ECHDC3Q96DC8 303 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 VMP1Q96GC9 406 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 APOL4Q9BPW4 351 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 MTG2Q9H4K7 406 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 EPS8L2Q9H6S3 715 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 VPS29Q9UBQ0 182 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SRRDQ9UH36 339 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 SLC6A14Q9UN76 642 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 RNF6Q9Y252 685 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 TMED5Q9Y3A6 229 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 PCDHGA6Q9Y5G7 932 aa7.24□□□□□ -1.25
LIMA1-213ENST00000552720 OR2A25A4D2G3 310 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 PABPN1LA6NDY0 278 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM221A6NGB7 291 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 KPNA4O00629 521 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 HOXA2O43364 376 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ARHGEF15O94989 841 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SOD2P04179 222 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TGM1P22735 817 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CA8P35219 290 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 BDKRB1P46663 353 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CSNK1DP48730 415 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TRPC1P48995 793 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 EIF2B2P49770 351 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 DGKEP52429 567 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CRISP3P54108 245 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ITGA1P56199 1179 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SNRPD1P62314 119 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SLC13A2Q13183 592 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 NAE1Q13564 534 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CARTPTQ16568 116 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 HIST2H2ACQ16777 129 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 DGUOKQ16854 277 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF385BQ569K4 471 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FAM180BQ6P0A1 224 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FAHD1Q6P587 224 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 Q6ZVL8 140 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 USP45Q70EL2 814 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TSPYL5Q86VY4 417 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 THOC6Q86W42 341 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CCDC103Q8IW40 242 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FAM217AQ8IXS0 508 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 OR4K1Q8NGD4 311 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 RAET1EQ8TD07 263 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms