RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 TRMT1Q9NXH9 659 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 ARL15Q9NXU5 204 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 PLEKHB1Q9UF11 243 aaPredicted RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 MRPS2Q9Y399 296 aaKnown RBP10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 SLC22A7Q9Y694 548 aa10.32□□□□□ -0.76
VTI1BP3-201ENST00000550220 FER1L5A0AVI2 2057 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 WIPF3A6NGB9 483 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 CCDC188H7C350 402 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 CDK2AP1O14519 115 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 SEMA7AO75326 666 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 UQCRHP07919 91 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 SLC35G6P0C7Q6 338 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 NPPBP16860 134 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 GABRB3P28472 473 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 BCL6P41182 706 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 AGTR2P50052 363 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 ARL4CP56559 192 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 PER3P56645 1201 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 CSNK1G2P78368 415 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 DR1Q01658 176 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 PWP1Q13610 501 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 HERC3Q15034 1050 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 TEDDM1Q5T9Z0 273 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 TMEM214Q6NUQ4 689 aaKnown RBP10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 FAM180AQ6UWF9 173 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 LINC00696Q6ZRV3 163 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 STRA8Q7Z7C7 330 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 ASPGQ86U10 573 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 TMEM151BQ8IW70 566 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 ZC3H7AQ8IWR0 971 aaKnown RBP10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 DTWD1Q8N5C7 304 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 BCORP1Q8N888 145 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 BBOF1Q8ND07 529 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 ABHD11Q8NFV4 315 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR1N1Q8NGS0 311 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 SUN3Q8TAQ9 357 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 C8orf44Q96CB5 159 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 TM4SF19Q96DZ7 209 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 LINGO1Q96FE5 620 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 PDLIM5Q96HC4 596 aaKnown RBP10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 SARGQ9BW04 601 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 CLK4Q9HAZ1 481 aaKnown RBP10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 NSMCE4AQ9NXX6 385 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 ADAMTS6Q9UKP5 1117 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 SAR1BQ9Y6B6 198 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 POLEQ07864 2286 aa10.31□□□□□ -0.76
VTI1BP3-201ENST00000550220 TNRC6AQ8NDV7 1962 aaKnown RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 SNRNP200O75643 2136 aaKnown RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 KLHL18O94889 574 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 IVDP26440 423 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 SOX11P35716 441 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 ELK3P41970 407 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 CDKN2DP55273 166 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 GNG11P61952 73 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 TIAL1Q01085 375 aaKnown RBP eCLIP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 MEF2AQ02078 507 aaPredicted RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 CSHL1Q14406 222 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 MINDY4Q4G0A6 757 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 MSS51Q4VC12 460 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 HECTD2Q5U5R9 776 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 ABHD17BQ5VST6 288 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 HIBCHQ6NVY1 386 aaPredicted RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 VN1R4Q7Z5H5 301 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 PLD3Q8IV08 490 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 NKAPQ8N5F7 415 aaKnown RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 MFSD9Q8NBP5 474 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR4K1Q8NGD4 311 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR9A4Q8NGU2 314 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR56A3Q8NH54 315 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR51Q1Q8NH59 317 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 BRIX1Q8TDN6 353 aaKnown RBP10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 GRHL3Q8TE85 626 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 PSMF1Q92530 271 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 FBXL8Q96CD0 374 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 SNF8Q96H20 258 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 VPS39Q96JC1 886 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 IMMP1LQ96LU5 166 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 OR1F2PQ96R84 312 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 CYTH2Q99418 400 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 ATG10Q9H0Y0 220 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 STMN3Q9NZ72 180 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 PTGFRNQ9P2B2 879 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 TEX264Q9Y6I9 313 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 COL12A1Q99715 3063 aa10.3□□□□□ -0.76
VTI1BP3-201ENST00000550220 A0A1B0GUH1 482 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 TRBC2A0A5B9 178 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 URADA6NGE7 173 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 CYSRT1A8MQ03 144 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 P2RX6O15547 441 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 TSPAN12O95859 305 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 CRYABP02511 175 aaKnown RBP10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 F7P08709 466 aaPredicted RBP10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 CDH1P12830 882 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 XCR1P46094 333 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 HNMTP50135 292 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 TNFSF10P50591 281 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 MAT1AQ00266 395 aaKnown RBP10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 EEF1A2Q05639 463 aaKnown RBP10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 RGS1Q08116 209 aa10.29□□□□□ -0.76
VTI1BP3-201ENST00000550220 PCOLCEQ15113 449 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms