RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ZNF382Q96SR6 550 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 APOL2Q9BQE5 337 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 PELOQ9BRX2 385 aaKnown RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 MED18Q9BUE0 208 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 TRIM62Q9BVG3 475 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 MCOLN1Q9GZU1 580 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 CDT1Q9H211 546 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 PIGUQ9H490 435 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 TUBB1Q9H4B7 451 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 NXF3Q9H4D5 531 aaKnown RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 GLOD4Q9HC38 313 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 ZBTB20Q9HC78 741 aaPredicted RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 KRT84Q9NSB2 600 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 INTS7Q9NVH2 962 aaKnown RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 C1orf109Q9NX04 203 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 MAT2BQ9NZL9 334 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 MPP6Q9NZW5 540 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 HMGXB4Q9UGU5 601 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 TMPRSS11EQ9UL52 423 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 SNX6Q9UNH7 406 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 MAN2B2Q9Y2E5 1009 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 KLHL20Q9Y2M5 609 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 NOSIPQ9Y314 301 aaKnown RBP6.49□□□□□ -1.37
USP28-207ENST00000538475 V9GYH0 126 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 MCM3APO60318 1980 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 CHD5Q8TDI0 1954 aa6.49□□□□□ -1.37
USP28-207ENST00000538475 A0A087WZ62 844 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 A0A096LPI6 279 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 TRBV5-3A0A0A0MS03 114 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 A0A1W2PRG6 482 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 LCHNA4D1U4 455 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 LACTBL1A8MY62 500 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 KRBOX1C9JBD0 128 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 KCNK1O00180 336 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 POLRMTO00411 1230 aaKnown RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 TOR1AO14656 332 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 FGF10O15520 208 aaPredicted RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 KIAA0513O60268 411 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 SCN2BO60939 215 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 WDR47O94967 919 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 CELF2O95319 508 aaKnown RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 LCKP06239 509 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 TPOP07202 933 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 PRKAR1AP10644 381 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ANXA8P13928 327 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 NPR1P16066 1061 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ATF6P18850 670 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 TNNI3P19429 210 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 UQCRC1P31930 480 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 NTF4P34130 210 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 HMGCLP35914 325 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ABCG1P45844 678 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 GTF2A2P52657 109 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 GBX2P52951 348 aaPredicted RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 ITGA1P56199 1179 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 PER3P56645 1201 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 CLDN20P56880 219 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 RAB14P61106 215 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 UFM1P61960 85 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 RRAS2P62070 204 aaPredicted RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 PSPHP78330 225 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 TSPY1Q01534 308 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ACVR1Q04771 509 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 SCRN3Q0VDG4 424 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 GALEQ14376 348 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 KIAA0040Q15053 153 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 SOWAHAQ2M3V2 549 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 BTBD16Q32M84 506 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 SETMARQ53H47 684 aaPredicted RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 CACHD1Q5VU97 1274 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 MEDAGQ5VYS4 303 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ESRP1Q6NXG1 681 aaKnown RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 AHSA2Q719I0 299 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 PLPPR4Q7Z2D5 763 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 UBE3DQ7Z6J8 389 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 C14orf80Q86SX3 495 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 GPAT4Q86UL3 456 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 CYP4Z1Q86W10 505 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 CILP2Q8IUL8 1156 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 RASGRP3Q8IV61 690 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ZDHHC21Q8IVQ6 265 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 DENND6AQ8IWF6 608 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ABI1Q8IZP0 508 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 DEFB106AQ8N104 65 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 FBXO39Q8N4B4 442 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 NKAPQ8N5F7 415 aaKnown RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.48□□□□□ -1.37
USP28-207ENST00000538475 EFHBQ8N7U6 833 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 LPCAT1Q8NF37 534 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 OR9Q1Q8NGQ5 310 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 ENKURQ8TC29 256 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 BRSK1Q8TDC3 778 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 SLC13A3Q8WWT9 602 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 MOCOSQ96EN8 888 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 MISP3Q96FF7 219 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 OPALINQ96PE5 141 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 MCCC1Q96RQ3 725 aaPredicted RBP6.48□□□□□ -1.37
USP28-207ENST00000538475 MARVELD1Q9BSK0 173 aa6.48□□□□□ -1.37
USP28-207ENST00000538475 TAPBPLQ9BX59 468 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms