RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MRPL12P52815 198 aaKnown RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 PNLIPRP2P54317 469 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 TMEM44Q2T9K0 475 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 HSP90AB3PQ58FF7 597 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 ZNF506Q5JVG8 444 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 ATP1A1-AS1Q5TC04 95 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 CCDC70Q6NSX1 233 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 ZNF530Q6P9A1 599 aaPredicted RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 EMBQ6PCB8 327 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 ZCCHC12Q6PEW1 402 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 TIFABQ6ZNK6 161 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 AACSQ86V21 672 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 EGFL6Q8IUX8 553 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 LRRC49Q8IUZ0 686 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 OTUD6BQ8N6M0 293 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 NAXEQ8NCW5 288 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 MPP4Q96JB8 637 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 FAM71F1Q96KD3 344 aaPredicted RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 TAAR6Q96RI8 345 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 OLFM1Q99784 485 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 ORC3Q9UBD5 711 aaPredicted RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 KLK11Q9UBX7 282 aa1.91□□□□□ -2.1
NUP54-208ENST00000508604 FBXO2Q9UK22 296 aaPredicted RBP1.91□□□□□ -2.1
NUP54-208ENST00000508604 SLC33A1O00400 549 aaPredicted RBP1.9□□□□□ -2.1
NUP54-208ENST00000508604 CYTIPO60759 359 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 WDHD1O75717 1129 aaPredicted RBP1.9□□□□□ -2.1
NUP54-208ENST00000508604 GIFP27352 417 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 GSK3BP49841 420 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 ZNF75DP51815 510 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 RALBP1Q15311 655 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 TMEM266Q2M3C6 531 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 TEX38Q6PEX7 206 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 C1orf122Q6ZSJ8 110 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 NUP54Q7Z3B4 507 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 ZNF830Q96NB3 372 aaPredicted RBP1.9□□□□□ -2.1
NUP54-208ENST00000508604 MAPKAP1Q9BPZ7 522 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 EBF4Q9BQW3 602 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 SP140LQ9H930 580 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 EQTNQ9NQ60 294 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 TERF2IPQ9NYB0 399 aa1.9□□□□□ -2.1
NUP54-208ENST00000508604 ABT1Q9ULW3 272 aaKnown RBP1.9□□□□□ -2.1
NUP54-208ENST00000508604 RNF123Q5XPI4 1314 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 NPHP3Q7Z494 1330 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 TRGV8A0A0C4DH27 118 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 RSPH10B2B2RC85 870 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 B4E171 279 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 SH3BP5O60239 455 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 TBX18O95935 607 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 RSPH10BP0C881 870 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 EDNRAP25101 427 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 TSPAN7P41732 249 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 SSR1P43307 286 aaKnown RBP1.9□□□□□ -2.11
NUP54-208ENST00000508604 TNNT2P45379 298 aaPredicted RBP1.9□□□□□ -2.11
NUP54-208ENST00000508604 SLC15A1P46059 708 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 RXRGP48443 463 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 MAPK12P53778 367 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 VEZF1Q14119 521 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 KRT79Q5XKE5 535 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 SLC22A15Q8IZD6 547 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 NFAM1Q8NET5 270 aaPredicted RBP1.9□□□□□ -2.11
NUP54-208ENST00000508604 OR9Q2Q8NGE9 314 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 BTBD9Q96Q07 612 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 TSPAN18Q96SJ8 248 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 SLC26A6Q9BXS9 759 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 ITPAQ9BY32 194 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 EGLN3Q9H6Z9 239 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 KCNMB3Q9NPA1 279 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 KRT84Q9NSB2 600 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 TBC1D13Q9NVG8 400 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 RAI14Q9P0K7 980 aa1.9□□□□□ -2.11
NUP54-208ENST00000508604 hCG_38984A0A1B0GV85 526 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 C2CD4DB7Z1M9 353 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 ZNF749O43361 778 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 MBD4O95243 580 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 CAPN3P20807 821 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 MAPK4P31152 587 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 HSPB3Q12988 150 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 FAM106AQ4KMX7 169 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 NHLRC3Q5JS37 347 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 CELF3Q5SZQ8 465 aaKnown RBP1.89□□□□□ -2.11
NUP54-208ENST00000508604 SNX30Q5VWJ9 437 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 FAM180BQ6P0A1 224 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 CTR9Q6PD62 1173 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 MTERF4Q7Z6M4 381 aaKnown RBP1.89□□□□□ -2.11
NUP54-208ENST00000508604 RPAINQ86UA6 219 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 DNAI2Q9GZS0 605 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 RBM28Q9NW13 759 aaKnown RBP1.89□□□□□ -2.11
NUP54-208ENST00000508604 WDR83OSQ9Y284 106 aa1.89□□□□□ -2.11
NUP54-208ENST00000508604 LOC100509620A0A075B734 347 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 TNFSF11O14788 317 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 EPB41L2O43491 1005 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 TPM2P07951 284 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 ODC1P11926 461 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 ZNF17P17021 662 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 ELK1P19419 428 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 ABCE1P61221 599 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 NAAAQ02083 359 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 MAP2K1Q02750 393 aaPredicted RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 DDX10Q13206 875 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 ZKSCAN8Q15776 578 aaPredicted RBP1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms