RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 JUPP14923 745 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 MPIP34949 423 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 PTSQ03393 145 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ZNF763Q0D2J5 394 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 BIKQ13323 160 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 SCARB2Q14108 478 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 LIPJQ5W064 366 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 GPR153Q6NV75 609 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 NRSN1Q8IZ57 195 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 RNF175Q8N4F7 328 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 PIK3C3Q8NEB9 887 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 TTLQ8NG68 377 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 DTD2Q96FN9 168 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 SHDQ96IW2 340 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 DNAAF2Q9NVR5 837 aaKnown RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 NUMBLQ9Y6R0 609 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ATG2BQ96BY7 2078 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ASCC3Q8N3C0 2202 aaKnown RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 PNMA8CA0A1B0GUJ8 204 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 SCN2BO60939 215 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 MATN4O95460 622 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 IL7RP16871 459 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 PRKACGP22612 351 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 NR4A1P22736 598 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 NR1H2P55055 460 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 RPL6Q02878 288 aaKnown RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 CEACAM20Q6UY09 585 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ZNF730Q6ZMV8 503 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 EPHX4Q8IUS5 362 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 Q8N9G6 341 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 UBXN10Q96LJ8 280 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 RBM4BQ9BQ04 359 aaKnown RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 RBM4Q9BWF3 364 aaKnown RBP13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ANKHQ9HCJ1 492 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 ACTR3BQ9P1U1 418 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 GMEB2Q9UKD1 530 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 SIPA1L1O43166 1804 aa13.62□□□□□ -0.23
TCOF1-207ENST00000504761 MAN1A2O60476 641 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 B4GALT2O60909 372 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 PRLP01236 227 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 IGLV3-27P01718 113 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 BCHEP06276 602 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 CAPN3P20807 821 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 RPS3P23396 243 aaKnown RBP eCLIP13.61□□□□□ -0.23
TCOF1-207ENST00000504761 TEAD4Q15561 434 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 RFX4Q33E94 735 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 PTCHD4Q6ZW05 846 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 LMAN2LQ9H0V9 348 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 EURLQ9NYK6 297 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 BCKDKO14874 412 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 APOA1P02647 267 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 CCNA2P20248 432 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 LASP1Q14847 261 aaKnown RBP13.61□□□□□ -0.23
TCOF1-207ENST00000504761 IFI44LQ53G44 452 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 ADGRD2Q7Z7M1 963 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 NXPE3Q969Y0 559 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 APIPQ96GX9 242 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 ZNF576Q9H609 170 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 CD207Q9UJ71 328 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 ATAD5Q96QE3 1844 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 TCEA1P23193 301 aaKnown RBP13.61□□□□□ -0.23
TCOF1-207ENST00000504761 KCNC3Q14003 757 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 KLHL12Q53G59 568 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 KANK2Q63ZY3 851 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 BLOC1S3Q6QNY0 202 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 DPPA4Q7L190 304 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 HMGN2P46Q86SG4 172 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 METTL27Q8N6F8 245 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-207ENST00000504761 MIEF2Q96C03 454 aa13.61□□□□□ -0.23
TCOF1-207ENST00000504761 C6orf62Q9GZU0 229 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-207ENST00000504761 OR6C74A6NCV1 312 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SLC16A5O15375 505 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CREG1O75629 220 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 OR6A2O95222 327 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 IL3P08700 152 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DEFB134Q4QY38 66 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GALNT10Q86SR1 603 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 LILRA3Q8N6C8 439 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 RASGEF1AQ8N9B8 481 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 TRPV3Q8NET8 790 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 DPYSL5Q9BPU6 564 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GTPBP2Q9BX10 602 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 PAIP1Q9H074 479 aaKnown RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 C5AR2Q9P296 337 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 FAM92AA1XBS5 289 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GNB5O14775 395 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CDC123O75794 336 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 SEMA4FO95754 770 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CLIC3O95833 236 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 LHCGRP22888 699 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 ITGB8P26012 769 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 AK4P27144 223 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-207ENST00000504761 AVPR1BP47901 424 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 GTDC1Q4AE62 458 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 ZFAND4Q86XD8 727 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 MFSD6LQ8IWD5 586 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 CCDC116Q8IYX3 515 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 COX18Q8N8Q8 333 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 OR52L1Q8NGH7 329 aa13.6□□□□□ -0.23
TCOF1-207ENST00000504761 PHF21AQ96BD5 680 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms