RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SMYD5Q6GMV2 418 aa15.97■□□□□ 0.15
COL7A1-210ENST00000487017 C1orf74Q96LT6 269 aa15.97■□□□□ 0.15
COL7A1-210ENST00000487017 FAM129BQ96TA1 746 aa15.97■□□□□ 0.15
COL7A1-210ENST00000487017 TMEM175Q9BSA9 504 aa15.97■□□□□ 0.15
COL7A1-210ENST00000487017 TXLNGYQ9BZA5 131 aa15.97■□□□□ 0.15
COL7A1-210ENST00000487017 COL14A1Q05707 1796 aaKnown RBP15.96■□□□□ 0.15
COL7A1-210ENST00000487017 ITGA10O75578 1167 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 ENTPD1P49961 510 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 SEC13P55735 322 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 RAB39AQ14964 217 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 LRRC66Q68CR7 880 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 NRSN1Q8IZ57 195 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 HERVK_113Q902F9 699 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 TMEM80Q96HE8 168 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 MUS81Q96NY9 551 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 CDRT1O95170 752 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 MAT2AP31153 395 aaKnown RBP15.96■□□□□ 0.15
COL7A1-210ENST00000487017 ATAT1Q5SQI0 421 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 TOMM5Q8N4H5 51 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 ZBTB8BQ8NAP8 495 aaPredicted RBP15.96■□□□□ 0.15
COL7A1-210ENST00000487017 SLC2A13Q96QE2 648 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 SLC30A2Q9BRI3 323 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 TBCCD1Q9NVR7 557 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 MED11Q9P086 117 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 FAM170BA6NMN3 283 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 FAM72CH0Y354 149 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 GNB5O14775 395 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 FAM72AQ5TYM5 149 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 FAM72DQ6L9T8 149 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 FAM72BQ86X60 149 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 GPALPP1Q8IXQ4 340 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 ADAMTS10Q9H324 1103 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 DPEP2Q9H4A9 486 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 WDR26Q9H7D7 661 aa15.96■□□□□ 0.15
COL7A1-210ENST00000487017 C7P10643 843 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 TLR1Q15399 786 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 HDDC3Q8N4P3 179 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 SLC22A18Q96BI1 424 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 TUBA1CQ9BQE3 449 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 SEZ6LQ9BYH1 1024 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 RC3H2Q9HBD1 1191 aaKnown RBP15.96■□□□□ 0.14
COL7A1-210ENST00000487017 TAC3Q9UHF0 121 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 UTS2RQ9UKP6 389 aa15.96■□□□□ 0.14
COL7A1-210ENST00000487017 MYH8P13535 1937 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ERI3O43414 337 aaKnown RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 SNAP29O95721 258 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 HLA-DPB1P04440 258 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 STEAP4Q687X5 459 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 AGTRAPQ6RW13 159 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 C15orf39Q6ZRI6 1047 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TMED9Q9BVK6 235 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CST11Q9H112 138 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 C14orf105Q9NVL8 296 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TACSTD2P09758 323 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CLCN7P51798 805 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 PRKCZQ05513 592 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 SLC10A2Q12908 348 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 LAPTM4AQ15012 233 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 RHEBL1Q8TAI7 183 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 PCYT2Q99447 389 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CYTH4Q9UIA0 394 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 XPNPEP2O43895 674 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 HPRP00739 348 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 SLC35E2BP0CK96 405 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ACP5P13686 325 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF182P17025 639 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 IVDP26440 423 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TSPAN5P62079 268 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 RPS13P62277 151 aaKnown RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CD83Q01151 205 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 NIPAL4Q0D2K0 466 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ADAM15Q13444 863 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 GPR68Q15743 365 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 C14orf80Q86SX3 495 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 GHDCQ8N2G8 530 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 FAM46DQ8NEK8 389 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 HCN4Q9Y3Q4 1203 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CMAHPQ9Y471 501 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 LRRC37A3O60309 1634 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 HTR1EP28566 365 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TAS2R50P59544 299 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 DNASE1L3Q13609 305 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 Q6ZVU0 165 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 BARD1Q99728 777 aaKnown RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TRIM36Q9NQ86 728 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 WDR37Q9Y2I8 494 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TLX2O43763 284 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CPNE3O75131 537 aaKnown RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 AHCYP23526 432 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 PGDP52209 483 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ABHD13Q7L211 337 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ZNF615Q8N8J6 731 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 FBXO15Q8NCQ5 510 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-210ENST00000487017 KLK6Q92876 244 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 KCNH6Q9H252 994 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 TXNRD2Q9NNW7 524 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 COPS7AQ9UBW8 275 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 CDH7Q9ULB5 785 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 SLC45A1Q9Y2W3 748 aa15.95■□□□□ 0.14
COL7A1-210ENST00000487017 ELOA3DA6NLF2 546 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms