RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PARVBQ9HBI1 364 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 TAS2R13Q9NYV9 303 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 MKL2Q9ULH7 1088 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 CROCCQ5TZA2 2017 aa17.81■□□□□ 0.44
CCDC88B-206ENST00000473405 PCDH17O14917 1159 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 JRKO75564 520 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 BMP10O95393 424 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 CLDN1O95832 211 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 AHSGP02765 367 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 FDXRP22570 491 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 HRH2P25021 359 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 CXCR2P25025 360 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 RGS4P49798 205 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 CSNK1G2P78368 415 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 TMEM214Q6NUQ4 689 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 UGT3A1Q6NUS8 523 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 AGTRAPQ6RW13 159 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 KIAA0408Q6ZU52 694 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 GALNT7Q86SF2 657 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 SIRT6Q8N6T7 355 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 TM4SF19Q96DZ7 209 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 LINGO1Q96FE5 620 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 CERS2Q96G23 380 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 NAT9Q9BTE0 207 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 SGPP1Q9BX95 441 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 ZNF700Q9H0M5 742 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 PCBD2Q9H0N5 130 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 ATG10Q9H0Y0 220 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 RIC8BQ9NVN3 520 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 PTGFRNQ9P2B2 879 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 SLC5A6Q9Y289 635 aa17.8■□□□□ 0.44
CCDC88B-206ENST00000473405 H0YIG0 161 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 ZSCAN12O43309 604 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 NSA2O95478 260 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 BCL6P41182 706 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 AVPR1BP47901 424 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 PGGT1BP53609 377 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 ELOAQ14241 798 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 NDUFA9Q16795 377 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 BBS9Q3SYG4 887 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 RIPOR1Q6ZS17 1223 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 MYO1HQ8N1T3 1032 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 FAR1Q8WVX9 515 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 PWWP2AQ96N64 755 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 SLX1AQ9BQ83 275 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 VN1R1Q9GZP7 353 aa17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 TRMT1Q9NXH9 659 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-206ENST00000473405 FEZF1A0PJY2 475 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 SLC16A5O15375 505 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 ITGAMP11215 1152 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 CDH1P12830 882 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 IL1RNP18510 177 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 TNFSF10P50591 281 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 ARG2P78540 354 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 NAE1Q13564 534 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 RPUSD3Q6P087 351 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 PCGF5Q86SE9 256 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 C17orf64Q86WR6 236 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 PDSS2Q86YH6 399 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 KCT2Q8NC54 265 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 GABPB2Q8TAK5 448 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 THAP11Q96EK4 314 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 IMMP1LQ96LU5 166 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 C5orf34Q96MH7 638 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 PLA2G3Q9NZ20 509 aa17.78■□□□□ 0.44
CCDC88B-206ENST00000473405 LCMT2O60294 686 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 C8orf89P0DMQ9 161 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 EDN3P14138 238 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 NPPBP16860 134 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 CCND1P24385 295 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 ELK3P41970 407 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 HP1BP3Q5SSJ5 553 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 TEDDM1Q5T9Z0 273 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 TRMT10BQ6PF06 316 aaKnown RBP17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 LCTLQ6UWM7 567 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 LANCL3Q6ZV70 420 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 MAMDC2Q7Z304 686 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 PALM2Q8IXS6 379 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 OR1N1Q8NGS0 311 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 ZCCHC10Q8TBK6 192 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 HCN3Q9P1Z3 774 aa17.77■□□□□ 0.44
CCDC88B-206ENST00000473405 DYTNA2CJ06 578 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 OR2W5A6NFC9 320 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 USP27XA6NNY8 438 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 SGK494L7N484 410 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 TP73O15350 636 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 CYC1P08574 325 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 TCP1P17987 556 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 XCR1P46094 333 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 IL2P60568 153 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 MORF4L2Q15014 288 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 STEAP4Q687X5 459 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 ZNF324BQ6AW86 544 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 FAM180AQ6UWF9 173 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 ASPGQ86U10 573 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 SLC26A11Q86WA9 606 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 CAMKVQ8NCB2 501 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 OR56A3Q8NH54 315 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 OR51Q1Q8NH59 317 aa17.76■□□□□ 0.43
CCDC88B-206ENST00000473405 HAS2Q92819 552 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms