RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CENPHQ9H3R5 247 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 GPN2Q9H9Y4 310 aaPredicted RBP18.91■□□□□ 0.62
COL9A3-204ENST00000463487 PRM3Q9NNZ6 103 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 LHX9Q9NQ69 397 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 CUTCQ9NTM9 273 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 NDOR1Q9UHB4 597 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 KCND3Q9UK17 655 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 CDC14AQ9UNH5 594 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 PCDHGA4Q9Y5G9 962 aa18.91■□□□□ 0.62
COL9A3-204ENST00000463487 APC2O95996 2303 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 A8MT66 165 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 C21orf140B9A014 251 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 DSCR3O14972 297 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 PRPF4O43172 522 aaKnown RBP eCLIP18.9■□□□□ 0.629e-7■■■■□ 19.5
COL9A3-204ENST00000463487 CD63P08962 238 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 ALAS2P22557 587 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 ARL1P40616 181 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-204ENST00000463487 BCL6P41182 706 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 SLC18A2Q05940 514 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 GTF2H2Q13888 395 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 SLBPQ14493 270 aaKnown RBP eCLIP18.9■□□□□ 0.62
COL9A3-204ENST00000463487 RBBP5Q15291 538 aaKnown RBP18.9■□□□□ 0.62
COL9A3-204ENST00000463487 TBCCQ15814 346 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 PRTGQ2VWP7 1150 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 PRAMEF17Q5VTA0 474 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 GTF2H2CQ6P1K8 395 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 C16orf46Q6P387 395 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 SH2D5Q6ZV89 423 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 TTLL10Q6ZVT0 673 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 TIPARPQ7Z3E1 657 aaKnown RBP18.9■□□□□ 0.62
COL9A3-204ENST00000463487 SPACA3Q8IXA5 215 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 DSELQ8IZU8 1212 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 ZSCAN1Q8NBB4 408 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 PPP4R1Q8TF05 950 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 SLC13A3Q8WWT9 602 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 MVB12AQ96EY5 273 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 CCNL2Q96S94 520 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-204ENST00000463487 NT5DC2Q9H857 520 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 ZFP69BQ9UJL9 534 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 AHCTF1Q8WYP5 2266 aa18.9■□□□□ 0.62
COL9A3-204ENST00000463487 ACACBO00763 2458 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 TEX51A0A1B0GUA7 166 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 URADA6NGE7 173 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 TAF4O00268 1085 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 MYL2P10916 166 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 RORAP35398 523 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 SCTRP47872 440 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 NAA20P61599 178 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 HERVK_113P63132 956 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 SKP1P63208 163 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 DCDP81605 110 aaKnown RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 MEF2AQ02078 507 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 GPS2Q13227 327 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 CHIT1Q13231 466 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 PWP1Q13610 501 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 TGIF1Q15583 401 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 PRMT9Q6P2P2 845 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 TMIGD1Q6UXZ0 262 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 ATP6V1E2Q96A05 226 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 WDR34Q96EX3 536 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 MAGEB10Q96LZ2 347 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 ERVK-6Q9BXR3 956 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 ACTR8Q9H981 624 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 STARD5Q9NSY2 213 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 GEMIN8Q9NWZ8 242 aaKnown RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 DHCR7Q9UBM7 475 aaKnown RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 GPN3Q9UHW5 284 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 RUVBL1Q9Y265 456 aaKnown RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 CHD8Q9HCK8 2581 aa18.89■□□□□ 0.61
COL9A3-204ENST00000463487 TPRP12270 2363 aaKnown RBP18.89■□□□□ 0.61
COL9A3-204ENST00000463487 URB1O60287 2271 aaKnown RBP18.88■□□□□ 0.61
COL9A3-204ENST00000463487 ANKDD1BA6NHY2 528 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 FOXO6A8MYZ6 492 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 E2F3O00716 465 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 NDUFS4O43181 175 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 UGDHO60701 494 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 SIX3O95343 332 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-204ENST00000463487 VARSP26640 1264 aaKnown RBP18.88■□□□□ 0.61
COL9A3-204ENST00000463487 SERPINB1P30740 379 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 DLSTP36957 453 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 HNF4AP41235 474 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 CASP2P42575 452 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 TMPRSS3P57727 454 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 RPS15P62841 145 aaKnown RBP18.88■□□□□ 0.61
COL9A3-204ENST00000463487 PCDH1Q08174 1060 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 DOC2AQ14183 400 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 NIPAL1Q6NVV3 410 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 ZYG11AQ6WRX3 759 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 GOLGA7Q7Z5G4 137 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 MYLK4Q86YV6 388 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-204ENST00000463487 SLC38A9Q8NBW4 561 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 REPS1Q96D71 796 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 RNF31Q96EP0 1072 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 PKNOX2Q96KN3 472 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 IPPKQ9H8X2 491 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 CROTQ9UKG9 612 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 STK38LQ9Y2H1 464 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 PADI2Q9Y2J8 665 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 ASB1Q9Y576 335 aa18.88■□□□□ 0.61
COL9A3-204ENST00000463487 IGF2RP11717 2491 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms