RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GPR1P46091 355 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 METAP1P53582 386 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 TBPL1P62380 186 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CTBSQ01459 385 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 TUBA3CQ13748 450 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 FNDC3BQ53EP0 1204 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 LRRC23Q53EV4 343 aaPredicted RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 PAGE2BQ5JRK9 111 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CBLL1Q75N03 491 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 PIWIL3Q7Z3Z3 882 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 SYTL1Q8IYJ3 562 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CHDHQ8NE62 594 aaPredicted RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 HERVK_113Q902F9 699 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 SH3KBP1Q96B97 665 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 NRBF2Q96F24 287 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 PPP1R16AQ96I34 528 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 OR2AG1Q9H205 316 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CHST8Q9H2A9 424 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 DPEP2Q9H4A9 486 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 EBF1Q9UH73 591 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 ATP6V1HQ9UI12 483 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 BLOC1S6Q9UL45 172 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CDC14AQ9UNH5 594 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 COQ6Q9Y2Z9 468 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 DYRK1BQ9Y463 629 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 K7ESM1 405 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 RNASET2O00584 256 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 DPM1O60762 260 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 NFATC1O95644 943 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 C1GALT1C1LP0DN25 315 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 ITGAMP11215 1152 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 ADRB3P13945 408 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 EEF1B2P24534 225 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 ARHGDIAP52565 204 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 RPS13P62277 151 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 SF1Q15637 639 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 TMEM52BQ4KMG9 183 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 ADNP2Q6IQ32 1131 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 PDE12Q6L8Q7 609 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 XKR5Q6UX68 686 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 TMEM26Q6ZUK4 368 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 TMPRSS11BQ86T26 416 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 TRAPPC5Q8IUR0 188 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 NPAS3Q8IXF0 933 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 LRRC56Q8IYG6 542 aaPredicted RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.52□□□□□ -0.082e-36■■■■■ 39.1
LDLR-202ENST00000455727 BHLHE41Q9C0J9 482 aaPredicted RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 LIN28AQ9H9Z2 209 aaKnown RBP14.52□□□□□ -0.08
LDLR-202ENST00000455727 DEC1Q9P2X7 70 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 CIDEBQ9UHD4 219 aa14.52□□□□□ -0.08
LDLR-202ENST00000455727 VEGFDO43915 354 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 C1QCP02747 245 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 C6P13671 934 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 PRKACGP22612 351 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 POLR2IP36954 125 aaKnown RBP14.52□□□□□ -0.09
LDLR-202ENST00000455727 VIPR2P41587 438 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 TPD52P55327 224 aaPredicted RBP14.52□□□□□ -0.09
LDLR-202ENST00000455727 ISL1P61371 349 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 MESP2Q0VG99 397 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 GTF2H3Q13889 308 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 GAB4Q2WGN9 574 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 ZNF691Q5VV52 312 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 RAET1GQ6H3X3 334 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 R3HCC1LQ7Z5L2 792 aaKnown RBP14.52□□□□□ -0.09
LDLR-202ENST00000455727 OR13F1Q8NGS4 319 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 CDC26Q8NHZ8 85 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 ZFP90Q8TF47 636 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 SETD7Q8WTS6 366 aaKnown RBP14.52□□□□□ -0.09
LDLR-202ENST00000455727 FBLIM1Q8WUP2 373 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 FAM129BQ96TA1 746 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 ATXN10Q9UBB4 475 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 ZNF282Q9UDV7 671 aaPredicted RBP14.52□□□□□ -0.09
LDLR-202ENST00000455727 PRKAG2Q9UGJ0 569 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 TSC22D4Q9Y3Q8 395 aa14.52□□□□□ -0.09
LDLR-202ENST00000455727 A0A1B0GVG6 124 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 B4GAT1O43505 415 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 PCDH7O60245 1069 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 FABP3P05413 133 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 GSTM2P28161 218 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 ACADLP28330 430 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 DNAJA1P31689 397 aaKnown RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 SLC6A11P48066 632 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 TAP2Q03519 686 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 PPP1R8Q12972 351 aaKnown RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 HIST2H2ACQ16777 129 aaPredicted RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 HKDC1Q2TB90 917 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 ANKRD34AQ69YU3 496 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 HIST2H2AA3Q6FI13 130 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 ANKRD26P1Q6NSI1 321 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 CHST15Q7LFX5 561 aaPredicted RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 ZNF547Q8IVP9 402 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 OR2L2Q8NH16 312 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 GOT1L1Q8NHS2 421 aaPredicted RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 SMG7Q92540 1137 aaKnown RBP14.51□□□□□ -0.09
LDLR-202ENST00000455727 ASPSCR1Q9BZE9 553 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 ADNPQ9H2P0 1102 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 TMEM245Q9H330 911 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 WBP1LQ9NX94 342 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 VNN3Q9NY84 501 aa14.51□□□□□ -0.09
LDLR-202ENST00000455727 FZD4Q9ULV1 537 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms