RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 YY1AP1Q9H869 796 aa13.16□□□□□ -0.3
CLK3-203ENST00000454830 CARS2Q9HA77 564 aaKnown RBP13.16□□□□□ -0.3
CLK3-203ENST00000454830 CUEDC1Q9NWM3 386 aaPredicted RBP13.16□□□□□ -0.3
CLK3-203ENST00000454830 ZFR2Q9UPR6 939 aaKnown RBP13.16□□□□□ -0.3
CLK3-203ENST00000454830 NCKAP1Q9Y2A7 1128 aa13.16□□□□□ -0.3
CLK3-203ENST00000454830 LRRK1Q38SD2 2015 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 MYO1GB0I1T2 1018 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 C1QCP02747 245 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 BMP2P12643 396 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 PAX7P23759 505 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 TIA1P31483 386 aaKnown RBP eCLIP13.15□□□□□ -0.3
CLK3-203ENST00000454830 CTHP32929 405 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 CCR3P51677 355 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 IST1P53990 364 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 FGL2Q14314 439 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 SPIN4Q56A73 249 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 TMTC4Q5T4D3 741 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 ZNF786Q8N393 782 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 OR4A15Q8NGL6 344 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 C1QTNF7Q9BXJ2 289 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 SPATA6Q9NWH7 488 aaPredicted RBP13.15□□□□□ -0.3
CLK3-203ENST00000454830 BTBD3Q9Y2F9 522 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 GABRR3A8MPY1 467 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 CLOCKO15516 846 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 CREG1O75629 220 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 PIM1P11309 404 aaPredicted RBP13.15□□□□□ -0.3
CLK3-203ENST00000454830 TAS2R50P59544 299 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 UNC5DQ6UXZ4 953 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 ANKFN1Q8N957 763 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 ZNF548Q8NEK5 533 aaPredicted RBP13.15□□□□□ -0.3
CLK3-203ENST00000454830 SNX8Q9Y5X2 465 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 PLXNA2O75051 1894 aa13.15□□□□□ -0.3
CLK3-203ENST00000454830 TCRBV5S2A0A599 114 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 A6NHS1 94 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 LINGO3P0C6S8 592 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 RAP2AP10114 183 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 ACADLP28330 430 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 CRATP43155 626 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 DPY19L1Q2PZI1 675 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 TICAM1Q8IUC6 712 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 OFCC1Q8IZS5 231 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 C10orf111Q8N326 155 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 TRIML2Q8N7C3 387 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 TESCQ96BS2 214 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 TPD52L3Q96J77 140 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 KAT8Q9H7Z6 458 aaKnown RBP13.15□□□□□ -0.31
CLK3-203ENST00000454830 RAPGEFL1Q9UHV5 662 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 VPS4AQ9UN37 437 aa13.15□□□□□ -0.31
CLK3-203ENST00000454830 MAGED1Q9Y5V3 778 aaPredicted RBP13.15□□□□□ -0.31
CLK3-203ENST00000454830 MYO10Q9HD67 2058 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 PCM1Q15154 2024 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 OR1F1O43749 312 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 TNFAIP8O95379 198 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 CLPTM1O96005 669 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 SPESP1Q6UW49 350 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 NETO1Q8TDF5 533 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 UBE2E3Q969T4 207 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 PPCDCQ96CD2 204 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 AIF1LQ9BQI0 150 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 SERHLQ9NQF3 203 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 DMRT3Q9NQL9 472 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 NDRG2Q9UN36 371 aaKnown RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 WDR37Q9Y2I8 494 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 DGKBQ9Y6T7 804 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 DENRO43583 198 aaKnown RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 HSD3B1P14060 373 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 IDSP22304 550 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 HSD3B2P26439 372 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 KIR2DL1P43626 348 aaPredicted RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 GRSF1Q12849 480 aaKnown RBP eCLIP13.14□□□□□ -0.31
CLK3-203ENST00000454830 SLC14A1Q13336 389 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 UGT2A3Q6UWM9 527 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 ENPP7Q6UWV6 458 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 MARVELD2Q8N4S9 558 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 IL17RCQ8NAC3 791 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 COX14Q96I36 57 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 LINC00615Q96LM1 132 aaPredicted RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 CPPED1Q9BRF8 314 aaPredicted RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 HAUS8Q9BT25 410 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 GRIP2Q9C0E4 1043 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 ZNF576Q9H609 170 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 BRF2Q9HAW0 419 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 AASDHPPTQ9NRN7 309 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 PRUNE2Q8WUY3 3088 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 SCAMP2O15127 329 aaKnown RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 SCELO95171 688 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 CCNYL2Q5T2Q4 361 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 ATG9BQ674R7 924 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 PPP4R4Q6NUP7 873 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 RNF165Q6ZSG1 346 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 ARMCX6Q7L4S7 300 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 OR5AK3PQ8NH89 298 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 STARD8Q92502 1023 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 TMBIM1Q969X1 311 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 DUS3LQ96G46 650 aaKnown RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 F2RL3Q96RI0 385 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 UHRF1Q96T88 793 aaPredicted RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 INSM2Q96T92 566 aaPredicted RBP13.14□□□□□ -0.31
CLK3-203ENST00000454830 TPT1P8Q9HAU6 139 aa13.14□□□□□ -0.31
CLK3-203ENST00000454830 UTS2RQ9UKP6 389 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms