RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ART5Q96L15 291 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 NEDD4LQ96PU5 975 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF347Q96SE7 839 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 SNTG1Q9NSN8 517 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TUBA8Q9NY65 449 aaPredicted RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF236Q9UL36 1845 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 A0A1B0GVM2 712 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 A0A1W2PRU2 124 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 GSAPA4D1B5 854 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 HTR3EA5X5Y0 456 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 DRGXA6NNA5 263 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 H3BNC9 293 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 M0QX08 132 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 STX16O14662 325 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF12P17014 697 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF135P52742 658 aaPredicted RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 CDH4P55283 916 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF33AQ06730 810 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TSTQ16762 297 aaKnown RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 ADGRF1Q5T601 910 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF691Q5VV52 312 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 NOXRED1Q6NXP6 359 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 BEND5Q7L4P6 421 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 NFKBIDQ8NI38 313 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 ZNF420Q8TAQ5 688 aaPredicted RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 CHPT1Q8WUD6 406 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 MUL1Q969V5 352 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 NUSAP1Q9BXS6 441 aaKnown RBP8.37□□□□□ -1.07
USP40-203ENST00000427112 DSN1Q9H410 356 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TPT1P8Q9HAU6 139 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 STARD7Q9NQZ5 370 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 TMEM161AQ9NX61 479 aa8.37□□□□□ -1.07
USP40-203ENST00000427112 CCRL2O00421 344 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 LATO43561 262 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 UGT2B11O75310 529 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TULP3O75386 442 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CLDN11O75508 207 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SERPINI2O75830 405 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 OAZ2O95190 189 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ANXA4P09525 319 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 TNNI3P19429 210 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 GABRR2P28476 465 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CD40LGP29965 261 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 HOXD11P31277 338 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 FKBP1BP68106 108 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 MGAT3Q09327 533 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 GAB1Q13480 694 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CAMK2GQ13555 558 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 NIPAL1Q6NVV3 410 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 RBFAQ8N0V3 343 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TAGAPQ8N103 731 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 OR4A15Q8NGL6 344 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 PCNPQ8WW12 178 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 ATL1Q8WXF7 558 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 MMP28Q9H239 520 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TRPV5Q9NQA5 729 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 MARCH5Q9NX47 278 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CLEC4AQ9UMR7 237 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 GPC6Q9Y625 555 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 DOCK4Q8N1I0 1966 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CHD5Q8TDI0 1954 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TNFRSF11BO00300 401 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SNX4O95219 450 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 C6orf47O95873 294 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 KDELR2P33947 212 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 METAP1P53582 386 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 RFX4Q33E94 735 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DEPDC1Q5TB30 811 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 BRAT1Q6PJG6 821 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 WDR53Q7Z5U6 358 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 MRPL10Q7Z7H8 261 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 RBM45Q8IUH3 476 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 LRRC49Q8IUZ0 686 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 GPR150Q8NGU9 434 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DUS3LQ96G46 650 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 C8orf48Q96LL4 319 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ANKRA2Q9H9E1 313 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SGK2Q9HBY8 427 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ACOT13Q9NPJ3 140 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SERHLQ9NQF3 203 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 PLSCR3Q9NRY6 295 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 MS4A12Q9NXJ0 267 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 DNMT3BQ9UBC3 853 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 LHX3Q9UBR4 397 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 KLHL3Q9UH77 587 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 GNPTGQ9UJJ9 305 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TPRKBQ9Y3C4 175 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SPTBN5Q9NRC6 3674 aaKnown RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 IGLV3-10A0A075B6K4 115 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 NEDD8-MDP1E9PL57 170 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 H0YAE9 185 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SEPT4O43236 478 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CPNE6O95741 557 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 PCMT1P22061 227 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 TTKP33981 857 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 CHI3L1P36222 383 aaPredicted RBP8.36□□□□□ -1.07
USP40-203ENST00000427112 MAPKAPK2P49137 400 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 SUOXP51687 545 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ACLYP53396 1101 aa8.36□□□□□ -1.07
USP40-203ENST00000427112 ST3GAL4Q11206 333 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms