RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 A0A1B0GVT2 93 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 OR2AG2A6NM03 316 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 EEF1E1O43324 174 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 MT-ND2P03891 347 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 COG8Q96MW5 612 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TAS2R9Q9NYW1 312 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC17A7Q9P2U7 560 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TOXO94900 526 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CDK1P06493 297 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 UCHL1P09936 223 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 MPP1Q00013 466 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PARP15Q460N3 678 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TNFAIP8L2Q6P589 184 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 FIGNL1Q6PIW4 674 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CCDC32Q9BV29 185 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 FBRSQ9HAH7 460 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 GCM1Q9NP62 436 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC35F4A4IF30 521 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 H1F0P07305 194 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 DPP6P42658 865 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 HNRNPA0Q13151 305 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CRHR2Q13324 411 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 S100A7AQ86SG5 101 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 GALNT10Q86SR1 603 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 METTL4Q8N3J2 472 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PROKR1Q8TCW9 393 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 SAMD11Q96NU1 681 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ATG4BQ9Y4P1 393 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 E7ESA3 106 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PSMD8P48556 350 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CLCN2P51788 898 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ZC3H14Q6PJT7 736 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CREB3L2Q70SY1 520 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM160A2Q8N612 972 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 MTFR1LQ9H019 292 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 DNASE1P24855 282 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 TAS2R20P59543 309 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 JPH3Q8WXH2 748 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ATG4CQ96DT6 458 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 FCRL2Q96LA5 508 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 DKKL1Q9UK85 242 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 SNX10Q9Y5X0 201 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 H3BSH0 61 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 VSX2P58304 361 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 GLT8D1Q68CQ7 371 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 TRAPPC6BQ86SZ2 158 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 SUMF2Q8NBJ7 301 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 AQP11Q8NBQ7 271 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PRMT8Q9NR22 394 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PLCXD1Q9NUJ7 323 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ZMAT5Q9UDW3 170 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PCDHB14Q9Y5E9 798 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 A2ML1A8K2U0 1454 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 TREHO43280 583 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PRPH2P23942 346 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 MOGQ16653 247 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 DPY19L3Q6ZPD9 716 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 TRABD2AQ86V40 505 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 GID4Q8IVV7 300 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ULBP1Q9BZM6 244 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 SRMSQ9H3Y6 488 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PCM1Q15154 2024 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 NT5C1B-RDH14C9J2C7 533 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ERBB2P04626 1255 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CDK18Q07002 472 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 RBM39Q14498 530 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CDC42EP5Q6NZY7 148 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 NLGN3Q9NZ94 848 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 RNF13O43567 381 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CCNFP41002 786 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CYCSP99999 105 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 MC2RQ01718 297 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 DHCR24Q15392 516 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 SPIN4Q56A73 249 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 GTF2H5Q6ZYL4 71 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 C9J4A7 227 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 COQ9O75208 318 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 TPPPO94811 219 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 CNOT4O95628 575 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 HOXD8P13378 290 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 MAXP61244 160 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 RCBTB1Q8NDN9 531 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 AURKBQ96GD4 344 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 RNF157Q96PX1 679 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF223Q9UK11 482 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 ERVW-1Q9UQF0 538 aa12.98□□□□□ -0.33
CCDC88A-204ENST00000413716 PROM1O43490 865 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SNAP29O95721 258 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 FUT4P22083 530 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC2A5P22732 501 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CHRNA4P43681 627 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CLCQ05315 142 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 RAB9BQ9NP90 201 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 BACE2Q9Y5Z0 518 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 B3GALT1Q9Y5Z6 326 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SNAPINO95295 136 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ALPPL2P10696 532 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CTSOP43234 321 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 BTBD1Q9H0C5 482 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 TP53TG5Q9Y2B4 290 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms