RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SNX18Q96RF0 628 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 ADPRHL2Q9NX46 363 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CRLS1Q9UJA2 301 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 PCDHGA2Q9Y5H1 932 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 GFRA2O00451 464 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 KIAA0513O60268 411 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 GABRB1P18505 474 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CRISP3P54108 245 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CYP4F2P78329 520 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 ST3GAL4Q11206 333 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CSTF3Q12996 717 aaKnown RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 LYPLAL1Q5VWZ2 237 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 ZNF367Q7RTV3 350 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 TCAIMQ8N3R3 496 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 OR10G2Q8NGC3 310 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 TMEM184CQ9NVA4 438 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 FAM120CQ9NX05 1096 aaKnown RBP20.43■□□□□ 0.86
UPF3A-202ENST00000375299 CFL2Q9Y281 166 aa20.43■□□□□ 0.86
UPF3A-202ENST00000375299 MANSC4A6NHS7 340 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 H3BQ06 376 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 HSMCR30P0CW71 290 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 COX7A2P14406 83 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 RHOAP61586 193 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 DMPKQ09013 629 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CDKL4Q5MAI5 379 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ARMC12Q5T9G4 340 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CXorf57Q6NSI4 855 aaKnown RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 DEPDC4Q8N2C3 294 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ELMO1Q92556 727 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 FCRL1Q96LA6 429 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CEP19Q96LK0 163 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 HTATIP2Q9BUP3 242 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 SPATA9Q9BWV2 254 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 TPT1P8Q9HAU6 139 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ZFYVE1Q9HBF4 777 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 C14orf119Q9NWQ9 140 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 TBC1D24Q9ULP9 559 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 GRIP1Q9Y3R0 1128 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 PCDHB11Q9Y5F2 797 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 OR6C75A6NL08 312 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CENPBD1B2RD01 187 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CAPN5O15484 640 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 PRMT3O60678 531 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ADAMTS4O75173 837 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 MFN2O95140 757 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 NUDT7P0C024 238 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 PPIGQ13427 754 aaKnown RBP eCLIP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 LRRC26Q2I0M4 334 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 BCL7AQ4VC05 210 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ATXN7L2Q5T6C5 722 aaPredicted RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 UTS2BQ765I0 119 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 SLC5A8Q8N695 610 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 L3MBTL4Q8NA19 623 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 DENND6BQ8NEG7 585 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 PIH1D2Q8WWB5 315 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 SLC30A2Q9BRI3 323 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 MARCH7Q9H992 704 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 IL26Q9NPH9 171 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 DDX28Q9NUL7 540 aaKnown RBP20.42■□□□□ 0.86
UPF3A-202ENST00000375299 ERVK13-1Q9NX77 482 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 POFUT2Q9Y2G5 429 aa20.42■□□□□ 0.86
UPF3A-202ENST00000375299 CXCR2P25025 360 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 ZNF157P51786 506 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 PRR23CQ6ZRP0 262 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 TSEN54Q7Z6J9 526 aaKnown RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 ADGRG2Q8IZP9 1017 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 C9orf43Q8TAL5 461 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 CDK5RAP1Q96SZ6 601 aaKnown RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 DOHHQ9BU89 302 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 CHST8Q9H2A9 424 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 KCTD5Q9NXV2 234 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 AFF4Q9UHB7 1163 aaKnown RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 FZD4Q9ULV1 537 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 TRAPPC4Q9Y296 219 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 CTDSP2O14595 271 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 ADAMDEC1O15204 470 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 GJB5O95377 273 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 VNN2O95498 520 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 MRPL58Q14197 206 aaKnown RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 STARD3Q14849 445 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 KCNA10Q16322 511 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 ZXDCQ2QGD7 858 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 CLLU1OSQ5K130 101 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 IFNL1Q8IU54 200 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 OR8J2Q8NGG1 315 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 TMCO6Q96DC7 493 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 KCNS3Q9BQ31 491 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 BTBD3Q9Y2F9 522 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 FCF1Q9Y324 198 aaKnown RBP20.41■□□□□ 0.86
UPF3A-202ENST00000375299 AP1M2Q9Y6Q5 423 aa20.41■□□□□ 0.86
UPF3A-202ENST00000375299 GLYATL1P3A0A0U1RQE8 302 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 TMEM229AB2RXF0 380 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 GUCY1B2O75343 617 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 KLKB1P03952 638 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 CBSLP0DN79 551 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 ANXA8P13928 327 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 AQP1P29972 269 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 CBSP35520 551 aa20.4■□□□□ 0.86
UPF3A-202ENST00000375299 NKX3-2P78367 333 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms