RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 OAZ2O95190 189 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ATP1B2P14415 290 aaPredicted RBP9.08□□□□□ -0.96
CUX1-201ENST00000292535 CDKN2BP42772 138 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 MARCKSL1P49006 195 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 BDH1Q02338 343 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 FAM110BQ8TC76 370 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 CMKLR1Q99788 373 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 Q9N2J8 555 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.08□□□□□ -0.96
CUX1-201ENST00000292535 FAM237AA0A1B0GTK4 181 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 KLK1P06870 262 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 PCDHB18PQ96TA0 734 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 UTS2RQ9UKP6 389 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 hCG_2039718K7EN88 272 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 RP2O75695 350 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 TMEM126BQ8IUX1 230 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 FUCA2Q9BTY2 467 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 CPQQ9Y646 472 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 EDF1O60869 148 aaKnown RBP9.08□□□□□ -0.96
CUX1-201ENST00000292535 NPTX1Q15818 432 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 OR7D4Q8NG98 312 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ALG3Q92685 438 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 B4DGG1 531 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 MT-ND1P03886 318 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 GJB1P08034 283 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ITGB5P18084 799 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 S100A7P31151 101 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 SMPDL3AQ92484 453 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ZFP3Q96NJ6 502 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 CXorf21Q9HAI6 301 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 FZD1Q9UP38 647 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ISPDA4D126 451 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 PCP4L1A6NKN8 68 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 GABRDO14764 452 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ACP5P13686 325 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 TATDN1Q6P1N9 297 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 MS4A12Q9NXJ0 267 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 ZNF226Q9NYT6 803 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 LGALS13Q9UHV8 139 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 A8MU76 341 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 FMO3P31513 532 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 TPRG1LQ5T0D9 272 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 JOSD2Q8TAC2 188 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 SEC14L1Q92503 715 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 COL21A1Q96P44 957 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 TLR9Q9NR96 1032 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 TNFRSF10DQ9UBN6 386 aa9.08□□□□□ -0.96
CUX1-201ENST00000292535 CPED1A4D0V7 1026 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 DAG1Q14118 895 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 GTF2IRD2BQ6EKJ0 949 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 GTF2IRD2Q86UP8 949 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ELP5Q8TE02 316 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 LRRC58Q96CX6 371 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 INPP4AQ96PE3 977 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 DNAJC5Q9H3Z4 198 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CNTN3Q9P232 1028 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 GMEB2Q9UKD1 530 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ZNF536O15090 1300 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ADH1BP00325 375 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 RAP2AP10114 183 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TMEM214Q6NUQ4 689 aaKnown RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 VASH1Q7L8A9 365 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 IL31RAQ8NI17 732 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CIB1Q99828 191 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ZNF700Q9H0M5 742 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 NLGN3Q9NZ94 848 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 DNAJB9Q9UBS3 223 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 KCNS2Q9ULS6 477 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 RAB30Q15771 203 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ZNF630Q2M218 657 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 KCNK18Q7Z418 384 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CLIP4Q8N3C7 705 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ZNF611Q8N823 705 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CHD3Q12873 2000 aaKnown RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 FXYD6-FXYD2A0A087WZ82 144 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ACOX3O15254 700 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TPST2O60704 377 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ALPIP09923 528 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 SLC15A1P46059 708 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TLE2Q04725 743 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 KCNC2Q96PR1 638 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 FXYD6Q9H0Q3 95 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TREM1Q9NP99 234 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 SLC2A4RGQ9NR83 387 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CHRAC1Q9NRG0 131 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 IL3P08700 152 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TPTEP56180 551 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 CCINQ13939 588 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 C2orf27AQ580R0 203 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 TREML2Q5T2D2 321 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ZDHHC3Q9NYG2 299 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 DOCK6Q96HP0 2047 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 FTCDNL1E5RQL4 147 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ATF4P18848 351 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 HOXA10P31260 410 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 KIAA0930Q6ICG6 404 aaPredicted RBP9.07□□□□□ -0.96
CUX1-201ENST00000292535 ABHD15Q6UXT9 468 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 XKR8Q9H6D3 395 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 GNG8Q9UK08 70 aa9.07□□□□□ -0.96
CUX1-201ENST00000292535 ERCC6L2Q5T890 1561 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms