RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DNAJA4Q8WW22 397 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 FATE1Q969F0 183 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 UBE2FQ969M7 185 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TBATAQ96M53 351 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 OR52E6Q96RD3 313 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 THUMPD1Q9NXG2 353 aaKnown RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 GLTPQ9NZD2 209 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CD274Q9NZQ7 290 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 EIF2B4Q9UI10 523 aaKnown RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TMPRSS11EQ9UL52 423 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TNPO3Q9Y5L0 923 aaKnown RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TRIP12Q14669 1992 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 NPEPPSL1A6NEC2 478 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PRR23AA6NEV1 266 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CDC7O00311 574 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 KIAA0355O15063 1070 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PROM1O43490 865 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ARHGEF15O94989 841 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PTHP01270 115 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PDGFAP04085 211 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ITGB1P05556 798 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CCNYL3P0C7X3 344 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 MSL3P1P0C860 447 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SLC2A4P14672 509 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ITGB8P26012 769 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CD86P42081 329 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RPL38P63173 70 aaKnown RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF79Q15937 498 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 BAK1Q16611 211 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RFTN2Q52LD8 501 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 FBXO48Q5FWF7 155 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RAB41Q5JT25 222 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SPANXN4Q5MJ08 99 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 LRIF1Q5T3J3 769 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SDE2Q6IQ49 451 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SLC27A1Q6PCB7 646 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF782Q6ZMW2 699 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TP53I13Q8NBR0 393 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 GPR151Q8TDV0 419 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 EPYCQ99645 322 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 C17orf62Q9BQA9 187 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 BEX2Q9BXY8 128 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 B3GNT4Q9C0J1 378 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 KCNH6Q9H252 994 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CLMPQ9H6B4 373 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ASIC5Q9NY37 505 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RIMKLBQ9ULI2 386 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 HCN4Q9Y3Q4 1203 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 MICAL3Q7RTP6 2002 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 IQCMA0A1B0GVH7 501 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 LINC00862A6NCI5 91 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 E5RI56 91 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ENPP3O14638 875 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CYP7B1O75881 506 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 OTCP00480 354 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 USP17L7P0C7H9 530 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CSTF2P33240 577 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ALDH9A1P49189 494 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CRYBB1P53674 252 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PSPHP78330 225 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 DAB2P98082 770 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 MLLT1Q03111 559 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PCDH1Q08174 1060 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 SIRPB2Q5JXA9 342 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PDZK1Q5T2W1 519 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 FAM171A1Q5VUB5 890 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 AFMIDQ63HM1 303 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 LRRC66Q68CR7 880 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ERICH5Q6P6B1 374 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PLET1Q6UQ28 207 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 KCTD20Q7Z5Y7 419 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 TAC4Q86UU9 113 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PHACTR4Q8IZ21 702 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 OR4L1Q8NH43 312 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 BADQ92934 168 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 KIAA1143Q96AT1 154 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 TMEM80Q96HE8 168 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 MGLLQ99685 303 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CDCA4Q9BXL8 241 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 SIK2Q9H0K1 926 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ABCB8Q9NUT2 735 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 MIOSQ9NXC5 875 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 POLHQ9Y253 713 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 VPS9D1Q9Y2B5 631 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 MAN2B2Q9Y2E5 1009 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CMAHPQ9Y471 501 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 UBA6A0AVT1 1052 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 GPR32O75388 356 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 SEMG1P04279 462 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 STSP08842 583 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 CSF2RAP15509 400 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 HTR6P50406 440 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 SRP54P61011 504 aaKnown RBP10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ITKQ08881 620 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ST3GAL4Q11206 333 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PTGR1Q14914 329 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 TAB1Q15750 504 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 GPR19Q15760 415 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ALKAL1Q6UXT8 129 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms