RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GPR83Q9NYM4 423 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 HNRNPCL2B2RXH8 293 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 LAMP1P11279 417 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ACPPP15309 386 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ACRV1P26436 265 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 CD6P30203 668 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 S100A5P33763 92 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ACSM2AQ08AH3 577 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 DEPDC1Q5TB30 811 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 KIAA1614Q5VZ46 1190 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ACSM2BQ68CK6 577 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 NOXRED1Q6NXP6 359 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 OR6Q1Q8NGQ2 317 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 RAD18Q9NS91 495 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 IMPAD1Q9NX62 359 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 RHCGQ9UBD6 479 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ANKRD36A6QL64 1941 aa14.79□□□□□ -0.04
UPF1-204ENST00000596842 ANKRD34BA5PLL1 514 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 FAM220BPB1ANY3 271 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CKMP06732 381 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 GJA1P17302 382 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CCR7P32248 378 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CDH12P55289 794 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 FCGRTP55899 365 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CLDN8P56748 225 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 LRRC74AQ0VAA2 488 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 NPRL3Q12980 569 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 GANABQ14697 944 aaKnown RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 MAD2L1BPQ15013 274 aaPredicted RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 MED22Q15528 200 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 FXNQ16595 210 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 HIST2H2ACQ16777 129 aaPredicted RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 TIGD6Q17RP2 521 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 VMACQ2NL98 169 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 C17orf99Q6UX52 265 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CACTIN-AS1Q8N1I8 211 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 OR4K1Q8NGD4 311 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 OR5AK3PQ8NH89 298 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 KCNS3Q9BQ31 491 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 ZDHHC6Q9H6R6 413 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 BOLA1Q9Y3E2 137 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 NPIPB15A6NHN6 443 aaPredicted RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 SH3BP5O60239 455 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 EOMESO95936 686 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 TRBC1P01850 177 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 ALG1LQ6GMV1 187 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 SPATC1Q76KD6 591 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 NLGN4XQ8N0W4 816 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 UPF1Q92900 1129 aaKnown RBP eCLIP14.78□□□□□ -0.041e-10■■■■■ 36.9
UPF1-204ENST00000596842 TP63Q9H3D4 680 aaPredicted RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 IL1RAPQ9NPH3 570 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CLEC4EQ9ULY5 219 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 PTPRDP23468 1912 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 STSP08842 583 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 CBX2Q14781 532 aaPredicted RBP14.78□□□□□ -0.04
UPF1-204ENST00000596842 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.78□□□□□ -0.04
UPF1-204ENST00000596842 LRRC66Q68CR7 880 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 PIH1D2Q8WWB5 315 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 OR51E2Q9H255 320 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 C14orf119Q9NWQ9 140 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 FZD4Q9ULV1 537 aa14.78□□□□□ -0.04
UPF1-204ENST00000596842 TSPAN4O14817 238 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 FPR1P21462 350 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 CD40LGP29965 261 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 RYKP34925 604 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 SPAM1P38567 509 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 ALDH7A1P49419 539 aaKnown RBP14.77□□□□□ -0.04
UPF1-204ENST00000596842 RAB15P59190 212 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 SCAMP4Q969E2 229 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 CEP19Q96LK0 163 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 FEVQ99581 238 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 TMEM121BQ9BXQ6 578 aaPredicted RBP14.77□□□□□ -0.04
UPF1-204ENST00000596842 TPT1P8Q9HAU6 139 aa14.77□□□□□ -0.04
UPF1-204ENST00000596842 SLC16A6O15403 523 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 AZGP1P25311 298 aaKnown RBP14.77□□□□□ -0.05
UPF1-204ENST00000596842 SPIBQ01892 262 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 NDUFA5Q16718 116 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 FRG2Q64ET8 278 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 NXPE1Q8N323 547 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 FRG2BQ96QU4 278 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 TSEN34Q9BSV6 310 aaKnown RBP14.77□□□□□ -0.05
UPF1-204ENST00000596842 MARCH5Q9NX47 278 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 BTBD3Q9Y2F9 522 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 PNMA8CA0A1B0GUJ8 204 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 SUV39H1O43463 412 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 SOAT1P35610 550 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 UBE3AQ05086 875 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 GPRC6AQ5T6X5 926 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 OR8H2Q8N162 312 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 ZIC5Q96T25 663 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 TM9SF3Q9HD45 589 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 RPS6KA6Q9UK32 745 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 ACSL6Q9UKU0 697 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 B3GNT3Q9Y2A9 372 aa14.77□□□□□ -0.05
UPF1-204ENST00000596842 MGAT4DA6NG13 374 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 TFECO14948 347 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 ADAMTS4O75173 837 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 NRIP1P48552 1158 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 CRISP3P54108 245 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 NAE1Q13564 534 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms