RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TXNDC16Q9P2K2 825 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 MYO9AB2RTY4 2548 aa14.33□□□□□ -0.12
VPS39-210ENST00000568357 KCNE1BA0A087WTH5 132 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 FEZF1A0PJY2 475 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CTAGE15A4D2H0 777 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 P2RX6O15547 441 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 LCMT2O60294 686 aaKnown RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 RFPL1O75677 317 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 ALBP02768 609 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 STATHP02808 62 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CTAGE8P0CG41 777 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 PIM1P11309 404 aaPredicted RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 CDH1P12830 882 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CCND1P24385 295 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 FOLR3P41439 243 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CCL11P51671 97 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 SLC12A2P55011 1212 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 ILF2Q12905 390 aaKnown RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 ATP1A4Q13733 1029 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 EFTUD2Q15029 972 aaKnown RBP eCLIP14.32□□□□□ -0.121e-5■□□□□ 8.3
VPS39-210ENST00000568357 TSNQ15631 228 aaKnown RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 MUM1Q2TAK8 710 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 UBAP2Q5T6F2 1119 aaKnown RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 GRTP1Q5TC63 336 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 VN1R4Q7Z5H5 301 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CTAGE6Q86UF2 777 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 C17orf64Q86WR6 236 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CTAGE4Q8IX94 777 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 KIF18AQ8NI77 898 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 RERGQ96A58 199 aaPredicted RBP14.32□□□□□ -0.12
VPS39-210ENST00000568357 FKBP10Q96AY3 582 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CABS1Q96KC9 395 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 SPSB2Q99619 263 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 MACROD1Q9BQ69 325 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 SLC26A1Q9H2B4 701 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 ZNF304Q9HCX3 659 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 CTSFQ9UBX1 484 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 SEC16AO15027 2179 aa14.32□□□□□ -0.12
VPS39-210ENST00000568357 PABPN1LA6NDY0 278 aaKnown RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 VSTM2BA6NLU5 285 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 MKRN2OSH3BPM6 223 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 PDGFAP04085 211 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 NR1D1P20393 614 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 STX2P32856 288 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 SPRP35270 261 aaPredicted RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 GMPRP36959 345 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 TLE1Q04724 770 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 ZKSCAN8Q15776 578 aaPredicted RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 C18orf21Q32NC0 220 aaPredicted RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 PRMT9Q6P2P2 845 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 SHISA6Q6ZSJ9 500 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 PPP1R32Q7Z5V6 425 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 MRGPREQ86SM8 312 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 RAB43Q86YS6 212 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 ABHD11Q8NFV4 315 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 OR4K1Q8NGD4 311 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 ATL1Q8WXF7 558 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 IFT81Q8WYA0 676 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 TRIM44Q96DX7 344 aaPredicted RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 TSPAN17Q96FV3 270 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 HAUS8Q9BT25 410 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 DERL2Q9GZP9 239 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 WDR54Q9H977 334 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 ACSS2Q9NR19 701 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 CTNNAL1Q9UBT7 734 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 TP53TG5Q9Y2B4 290 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 MRPS2Q9Y399 296 aaKnown RBP14.31□□□□□ -0.12
VPS39-210ENST00000568357 PCSK5Q92824 1860 aa14.31□□□□□ -0.12
VPS39-210ENST00000568357 MASP2O00187 686 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 TXNDC9O14530 226 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 FOXS1O43638 330 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 CCDC166P0CW27 439 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 CD1DP15813 335 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 STMN1P16949 149 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 ECHS1P30084 290 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 BCL6P41182 706 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 RAB10P61026 200 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 RPS15AP62244 130 aaKnown RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 CDKL1Q00532 357 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 MEF2AQ02078 507 aaPredicted RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 GLE1Q53GS7 698 aaKnown RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 LACTB2Q53H82 288 aaPredicted RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 CATSPEREQ5SY80 951 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 GARNL3Q5VVW2 1013 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 TCTN3Q6NUS6 607 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 RELL1Q8IUW5 271 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 TMEM102Q8N9M5 508 aaPredicted RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 TM4SF19Q96DZ7 209 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 UBXN10Q96LJ8 280 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 SOX17Q9H6I2 414 aaPredicted RBP14.3□□□□□ -0.12
VPS39-210ENST00000568357 P4HTMQ9NXG6 502 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 NINJ2Q9NZG7 142 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 SLC22A14Q9Y267 594 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 OARD1Q9Y530 152 aa14.3□□□□□ -0.12
VPS39-210ENST00000568357 TEP1Q99973 2627 aaKnown RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 FER1L5A0AVI2 2057 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 A0A0A6YYC8 382 aaPredicted RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 A6NL46 340 aa14.29□□□□□ -0.12
VPS39-210ENST00000568357 I3L1I5 382 aaPredicted RBP14.29□□□□□ -0.12
VPS39-210ENST00000568357 FFAR3O14843 346 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms