RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TBC1D21Q8IYX1 336 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CCDC116Q8IYX3 515 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OXR1Q8N573 874 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 ADCY4Q8NFM4 1077 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PEX11GQ96HA9 241 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 GRIP2Q9C0E4 1043 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 UTS2RQ9UKP6 389 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 POLEQ07864 2286 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CACNA1AO00555 2505 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 A6NL46 340 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 H3BNH8 94 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 LDOC1O95751 146 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 BMP8BP34820 402 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 BNIP3Q12983 259 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 INTS11Q5TA45 600 aaKnown RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 NEK5Q6P3R8 708 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ZNF549Q6P9A3 640 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 USP30Q70CQ3 517 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 SYT13Q7L8C5 426 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 C1orf210Q8IVY1 113 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 FAM156AQ8NDB6 213 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 TLCD1Q96CP7 247 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 DUSP26Q9BV47 211 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 SEMA6AQ9H2E6 1030 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 C5AR2Q9P296 337 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ATXN7L1Q9ULK2 861 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 SHROOM3Q8TF72 1996 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ZNF318Q5VUA4 2279 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 HTRA2O43464 458 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 MPIP34949 423 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 PTGR1Q14914 329 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 FAM98BQ52LJ0 330 aaKnown RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 RABEPKQ7Z6M1 372 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 P3H2Q8IVL5 708 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 COX18Q8N8Q8 333 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 MCCC1Q96RQ3 725 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 CMKLR1Q99788 373 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 HDAC8Q9BY41 377 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 SEC14L3Q9UDX4 400 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 SLC6A14Q9UN76 642 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 RTTNQ86VV8 2226 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 DLEC1Q9Y238 1755 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 FADS2P1A8MWK0 482 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 MAGEB17A8MXT2 336 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 MANBAO00462 879 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 CDH2P19022 906 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 COL9A1P20849 921 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 GCKP35557 465 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 DIO3P55073 304 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 YPEL5P62699 121 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 LRP8Q14114 963 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 TECRLQ5HYJ1 363 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ISLR2Q6UXK2 745 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ASPGQ86U10 573 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 RCBTB1Q8NDN9 531 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 LKAAEAR1Q8TD35 194 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 FUBP1Q96AE4 644 aaKnown RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 PTERQ96BW5 349 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 DGAT2Q96PD7 388 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 CTRCQ99895 268 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 RMI1Q9H9A7 625 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ACTR10Q9NZ32 417 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 ATP6V1HQ9UI12 483 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 DUSP12Q9UNI6 340 aa8.92□□□□□ -0.98
VPS39-205ENST00000562258 TDRD6O60522 2096 aaKnown RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 NUP214P35658 2090 aaPredicted RBP8.92□□□□□ -0.98
VPS39-205ENST00000562258 E7EQ34 232 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PPP6CO00743 305 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PDPK1O15530 556 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 NPHS1O60500 1241 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 HEXBP07686 556 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FDXRP22570 491 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PTGER1P34995 402 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ADRA1AP35348 466 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 LEXMQ3ZCV2 418 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FAM47BQ8NA70 645 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SLC37A2Q8TED4 501 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZBED6CLQ96FA7 236 aaPredicted RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 SLC39A3Q9BRY0 314 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ROGDIQ9GZN7 287 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 TREX1Q9NSU2 369 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 POLR1DQ9Y2S0 133 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZNF638Q14966 1978 aaKnown RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 C15orf38-AP3S2A0A0A6YYH1 394 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 TPST2O60704 377 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 TCEA3O75764 348 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 G6PDP11413 515 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 GLULP15104 373 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 RNF144AP50876 292 aaPredicted RBP8.91□□□□□ -0.98
VPS39-205ENST00000562258 PRR5P85299 388 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PCLAFQ15004 111 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ZNF678Q5SXM1 525 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 ARPINQ7Z6K5 226 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 SYNPOQ8N3V7 929 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 FAM13CQ8NE31 585 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 OR2T12Q8NG77 320 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 B4GALNT2Q8NHY0 566 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 PYDC1Q8WXC3 89 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 NAT6Q93015 286 aa8.91□□□□□ -0.98
VPS39-205ENST00000562258 CENPTQ96BT3 561 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms