RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 HSPA7P48741 367 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SPINT3P49223 89 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PPP3R1P63098 170 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TRMT5Q32P41 509 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 VWA2Q5GFL6 755 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 METTL21CQ5VZV1 264 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TMEM211Q6ICI0 200 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TTLL10Q6ZVT0 673 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CXXC5Q7LFL8 322 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PCDH19Q8TAB3 1148 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ZUFSPQ96AP4 578 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ZIM3Q96PE6 472 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 USB1Q9BQ65 265 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCDC86Q9H6F5 360 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 EQTNQ9NQ60 294 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ZNF185O15231 689 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PEX11AO75192 247 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 EBLN1P0CF75 366 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCNA2P20248 432 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ID4P47928 161 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 POU6F2P78424 691 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SEMG2Q02383 582 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SIRPB2Q5JXA9 342 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TBCELQ5QJ74 424 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TRIM68Q6AZZ1 485 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PGM2L1Q6PCE3 622 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HPS6Q86YV9 775 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ARL10Q8N8L6 244 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 GPBAR1Q8TDU6 330 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 EZH1Q92800 747 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TESCQ96BS2 214 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SERHLQ9NQF3 203 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 MYH7P12883 1935 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCDC163A0A0D9SF12 145 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 A0A1W2PRG6 482 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 IDSB3KWA1 339 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PLD2O14939 933 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ADAMDEC1O15204 470 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 OR10H3O60404 316 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SCELO95171 688 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TSPAN19P0C672 248 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 BMP1P13497 986 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ZNF37AP17032 561 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SLC6A8P48029 635 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 JAM2P57087 298 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HTRA4P83105 476 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SLC5A9Q2M3M2 681 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PIGWQ7Z7B1 504 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 FAM86B1Q8N7N1 296 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TSEN2Q8NCE0 465 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ATP6V1C2Q8NEY4 427 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 WDR24Q96S15 920 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCNB1IP1Q9NPC3 277 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 C3orf18Q9UK00 162 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 EMC9Q9Y3B6 208 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 N6AMT1Q9Y5N5 214 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 MYH2Q9UKX2 1941 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 WNK3Q9BYP7 1800 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCT8L1PA6NM43 557 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HIDE1A8MVS5 230 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 WNT7AO00755 349 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 AP1G1O43747 822 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 RPLP0P05388 317 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 GSTM3P21266 225 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 DCKP27707 260 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 RPS14P62263 151 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CCDC142Q17RM4 750 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ARMC4Q5T2S8 1044 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HGSNATQ68CP4 663 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TTC33Q6PID6 262 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CUZD1Q86UP6 607 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 RASGEF1CQ8N431 466 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 GOT1L1Q8NHS2 421 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PMM1Q92871 262 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SECISBP2Q96T21 854 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 AP4S1Q9Y587 144 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 LCHNA4D1U4 455 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 STX16-NPEPL1H3BU86 382 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 STX16O14662 325 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 C1GALT1C1LP0DN25 315 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 FCGR2AP12318 317 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HOXB9P17482 250 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 HMGCLP35914 325 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CSNK2A1P68400 391 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 MRPL28Q13084 256 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 C14orf28Q4W4Y0 310 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 RASSF6Q6ZTQ3 369 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 CREG2Q8IUH2 290 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 PNLDC1Q8NA58 520 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 RHBDF1Q96CC6 855 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 THOC1Q96FV9 657 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 ZNF347Q96SE7 839 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 GPER1Q99527 375 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 MOV10Q9HCE1 1003 aaKnown RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 SPHK1Q9NYA1 384 aa7.81□□□□□ -1.16
PTPRB-209ENST00000550857 COLQQ9Y215 455 aaPredicted RBP7.81□□□□□ -1.16
PTPRB-209ENST00000550857 TEX13CA0A0J9YWL9 993 aa7.8□□□□□ -1.16
PTPRB-209ENST00000550857 VSTM2BA6NLU5 285 aa7.8□□□□□ -1.16
PTPRB-209ENST00000550857 A8MUA0 341 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms