RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NLGN4YQ8NFZ3 816 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-212ENST00000543766 ZNF558Q96NG5 402 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 MS4A7Q9GZW8 240 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-212ENST00000543766 MIR1-1HGQ9H1L0 117 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 OR51V1Q9H2C8 321 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 PLCXD1Q9NUJ7 323 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 ANAPC2Q9UJX6 822 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 FBXL3Q9UKT7 428 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 STRAPQ9Y3F4 350 aaKnown RBP8.65□□□□□ -1.02
VPS13D-212ENST00000543766 CEPT1Q9Y6K0 416 aa8.65□□□□□ -1.02
VPS13D-212ENST00000543766 METTL15A6NJ78 407 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 SSNA1O43805 119 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 ZFPL1O95159 310 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 MMP3P08254 477 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 TCF4P15884 667 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 MATN1P21941 496 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 MSX1P28360 303 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 MC5RP33032 325 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 RPS5P46782 204 aaKnown RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 AQP4P55087 323 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 MYL7Q01449 175 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 PPATQ06203 517 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 SOX4Q06945 474 aaPredicted RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 PUM1Q14671 1186 aaKnown RBP eCLIP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 LARS2Q15031 903 aaKnown RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 ECM1Q16610 540 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 FNBP1LQ5T0N5 605 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 TTC23Q5W5X9 447 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 FBXL19Q6PCT2 694 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 ETFBKMTQ8IXQ9 262 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF276Q8N554 614 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 C12orf45Q8N5I9 185 aaPredicted RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 TRUB1Q8WWH5 349 aaKnown RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 KHSRPQ92945 711 aaKnown RBP eCLIP8.65□□□□□ -1.033e-6■□□□□ 9.8
VPS13D-212ENST00000543766 PKP2Q99959 881 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 C12orf65Q9H3J6 166 aaKnown RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 FAM120CQ9NX05 1096 aaKnown RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 ARPP21Q9UBL0 812 aaPredicted RBP8.65□□□□□ -1.03
VPS13D-212ENST00000543766 DNAJC12Q9UKB3 198 aa8.65□□□□□ -1.03
VPS13D-212ENST00000543766 NCANO14594 1321 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PRPF4O43172 522 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PRODHO43272 600 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 UBXN7O94888 489 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TTLL1O95922 423 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PGM1P36871 562 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 NDUFV1P49821 464 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 DEFA5Q01523 94 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 STX4Q12846 297 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TFDP2Q14188 446 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PDK4Q16654 411 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CYP1B1Q16678 543 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 NHSL2Q5HYW2 709 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 RIPPLY2Q5TAB7 128 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TMEM270Q6UE05 265 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 RIOX2Q8IUF8 465 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 OR13C2Q8NGS9 318 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SFT2D1Q8WV19 159 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 RHBDF1Q96CC6 855 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 C5orf30Q96GV9 206 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 NECTIN4Q96NY8 510 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 FAM118BQ9BPY3 351 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TUBB6Q9BUF5 446 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 ING2Q9H160 280 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SAE1Q9UBE0 346 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 DRG1Q9Y295 367 aaKnown RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 A0A0G2JMP0 313 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 RPS6KA4O75676 772 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 WDPCPO95876 746 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SOD2P04179 222 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SMIM6P0DI80 62 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 LAG3P18627 525 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 NAA10P41227 235 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CASP3P42574 277 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CDKN1BP46527 198 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PRKAA2P54646 552 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PRMT2P55345 433 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TIMM10P62072 90 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 OVGP1Q12889 678 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF846Q147U1 533 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 POU4F3Q15319 338 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SFT2D3Q587I9 215 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 LRRC38Q5VT99 294 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 TDRD10Q5VZ19 366 aaKnown RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 RBMS3Q6XE24 437 aaKnown RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 HIPK1Q86Z02 1210 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PAPD5Q8NDF8 572 aaKnown RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 STXBP6Q8NFX7 210 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CPA5Q8WXQ8 436 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 DIRC2Q96SL1 478 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 MROQ9BYG7 248 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 SSR3Q9UNL2 185 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CYP8B1Q9UNU6 501 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CLDN25C9JDP6 229 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 DNAJA2O60884 412 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 PSMD10O75832 226 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 APOC3P02656 99 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 HOXD4P09016 255 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 ZNF182P17025 639 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CEBPGP53567 150 aa8.64□□□□□ -1.03
VPS13D-212ENST00000543766 CXCR4P61073 352 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms