RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	UTP23	Q9BRU9	249 aa	Known RBP	11.77	□□□□□ -0.53
CAPN1-223	ENST00000533079	YIPF2	Q9BWQ6	316 aa		11.77	□□□□□ -0.53
CAPN1-223	ENST00000533079	DRC3	Q9H069	523 aa		11.77	□□□□□ -0.53
CAPN1-223	ENST00000533079	LRRC40	Q9H9A6	602 aa		11.77	□□□□□ -0.53
CAPN1-223	ENST00000533079	PCDHA3	Q9Y5H8	950 aa		11.77	□□□□□ -0.53
CAPN1-223	ENST00000533079	CACNA1C	Q13936	2221 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	MROH6	A6NGR9	719 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	NPIPA5	E9PKD4	350 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	ADAM10	O14672	748 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	SLCO2B1	O94956	709 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	ZNF24	P17028	368 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	PSMB5	P28074	263 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	CMPK1	P30085	196 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	DNAJA1	P31689	397 aa	Known RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	CCNF	P41002	786 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	COPS2	P61201	443 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	FOLH1	Q04609	750 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	POU6F1	Q14863	301 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	OR1C1	Q15619	314 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	EXT1	Q16394	746 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	BTBD16	Q32M84	506 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	CES4A	Q5XG92	561 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	KCTD11	Q693B1	232 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	WDR93	Q6P2C0	686 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	AFTPH	Q6ULP2	937 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	VRK3	Q8IV63	474 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	ZC3H7A	Q8IWR0	971 aa	Known RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	OR2A1	Q8NGT9	310 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	GSDMB	Q8TAX9	411 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	MAGEC3	Q8TD91	643 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	MMAB	Q96EY8	250 aa	Predicted RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	SIGLEC12	Q96PQ1	595 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	MIPEP	Q99797	713 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	ZNF559	Q9BR84	538 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	TMEM121	Q9BTD3	319 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	ARGLU1	Q9NWB6	273 aa	Predicted RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	UTP6	Q9NYH9	597 aa	Known RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	SPATA7	Q9P0W8	599 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	NPIPA1	Q9UND3	350 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	RUVBL1	Q9Y265	456 aa	Known RBP	11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079	EFR3B	Q9Y2G0	817 aa		11.76	□□□□□ -0.53
CAPN1-223	ENST00000533079		A0A1B0GTL3	188 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	TMEM200C	A6NKL6	621 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CCDC188	H7C350	402 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	ATP8B1	O43520	1251 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	WISP2	O76076	250 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	RBP3	P10745	1247 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	PKM	P14618	531 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	EZR	P15311	586 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	FOSL1	P15407	271 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	MSX1	P28360	303 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CHRNB4	P30926	498 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CXCR5	P32302	372 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CTNNA1	P35221	906 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	AGTR2	P50052	363 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CSE1L	P55060	971 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	TFF3	Q07654	80 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	FAM53B	Q14153	422 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	TEX35	Q5T0J7	233 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	TMEM211	Q6ICI0	200 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CPEB2	Q7Z5Q1	589 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	DMRTC2	Q8IXT2	367 aa	Predicted RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	SLC5A8	Q8N695	610 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CSNK1A1L	Q8N752	337 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	DNAAF3	Q8N9W5	541 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	NOA1	Q8NC60	698 aa	Known RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CFAP61	Q8NHU2	1237 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	ACTL9	Q8TC94	416 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	RERG	Q96A58	199 aa	Predicted RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CAPZA3	Q96KX2	299 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	OLFM1	Q99784	485 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	PARD6B	Q9BYG5	372 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	ANKZF1	Q9H8Y5	726 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	KLHL1	Q9NR64	748 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CIDEB	Q9UHD4	219 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	ASB1	Q9Y576	335 aa		11.75	□□□□□ -0.53
CAPN1-223	ENST00000533079	CCDC151	A5D8V7	595 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079		A8MUI8	341 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079		H0YGG7	62 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	PGRMC1	O00264	195 aa	Known RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	KPNA5	O15131	536 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	OR1I1	O60431	355 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	SEC24D	O94855	1032 aa	Predicted RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	C1orf105	O95561	183 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	KLK2	P20151	261 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	AOAH	P28039	575 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	CD96	P40200	585 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	IST1	P53990	364 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	EIF3E	P60228	445 aa	Known RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	ARF3	P61204	181 aa	Predicted RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	RELA	Q04206	551 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	SPARCL1	Q14515	664 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	NDUFA9	Q16795	377 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	P3H1	Q32P28	736 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	AARS2	Q5JTZ9	985 aa	Known RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	GALNTL5	Q7Z4T8	443 aa		11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	CHERP	Q8IWX8	916 aa	Known RBP	11.74	□□□□□ -0.53
CAPN1-223	ENST00000533079	ARHGEF39	Q8N4T4	335 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms