RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 UGT2B11O75310 529 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 NFATC1O95644 943 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 ZNF682O95780 498 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 EPCAMP16422 314 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 CEBPBP17676 345 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 CRHBPP24387 322 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 TIA1P31483 386 aaKnown RBP eCLIP14.34□□□□□ -0.11
NUP54-217ENST00000514987 TMBIM6P55061 237 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 FPGSQ05932 587 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DPTQ07507 201 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 KCNAB2Q13303 367 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DCTN2Q13561 401 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 EIF4HQ15056 248 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 EIF3MQ7L2H7 374 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 GPR155Q7Z3F1 870 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DCP2Q8IU60 420 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 C1orf52Q8N6N3 182 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 UBE2E3Q969T4 207 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 C12orf43Q96C57 262 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 LINC00615Q96LM1 132 aaPredicted RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 TRIM39Q9HCM9 518 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 ATAD3AQ9NVI7 634 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 FAM8A1Q9UBU6 413 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 ATP6V1HQ9UI12 483 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 VPS4AQ9UN37 437 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 MAGED1Q9Y5V3 778 aaPredicted RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 DOCK6Q96HP0 2047 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 VEGFDO43915 354 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 CPSF4O95639 269 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 FABP3P05413 133 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 RB1P06400 928 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 GSTM2P28161 218 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DNAJA1P31689 397 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 IST1P53990 364 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 PHEXP78562 749 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 SPIDRQ14159 915 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 GRIN2CQ14957 1233 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 TEAD4Q15561 434 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 FNDC3BQ53EP0 1204 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 ZNF691Q5VV52 312 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 PSRC1Q6PGN9 363 aaPredicted RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 CBLL1Q75N03 491 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 PIWIL3Q7Z3Z3 882 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 R3HCC1LQ7Z5L2 792 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 CROCCP3Q8IVE0 287 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 C10orf111Q8N326 155 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 OR13F1Q8NGS4 319 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 OR9A1PQ8NGU1 263 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 HUS1BQ8NHY5 278 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 SETD7Q8WTS6 366 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 SNX19Q92543 992 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 NUS1Q96E22 293 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 WRAP53Q9BUR4 548 aaKnown RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 SGPP1Q9BX95 441 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 AMBRA1Q9C0C7 1298 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 BHLHE41Q9C0J9 482 aaPredicted RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 ADNPQ9H2P0 1102 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 DPEP2Q9H4A9 486 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 MTG2Q9H4K7 406 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 ZNF282Q9UDV7 671 aaPredicted RBP14.34□□□□□ -0.11
NUP54-217ENST00000514987 GPR34Q9UPC5 381 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 TSC22D4Q9Y3Q8 395 aa14.34□□□□□ -0.11
NUP54-217ENST00000514987 TRIM64BA6NI03 449 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 C5orf67F2Z3F1 127 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 RNASET2O00584 256 aaKnown RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 NOBOXO60393 691 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 SEC14L2O76054 403 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 SEMG1P04279 462 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 CCDC159P0C7I6 412 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 C1GALT1C1LP0DN25 315 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 LAMP1P11279 417 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 CDK4P11802 303 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 FPR1P21462 350 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 IGFBP5P24593 272 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 ELK4P28324 431 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 GPR1P46091 355 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 RAE1P78406 368 aaKnown RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 HNRNPA1L2Q32P51 320 aaKnown RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 TMEM52BQ4KMG9 183 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 LRRC23Q53EV4 343 aaPredicted RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 FBXO46Q6PJ61 603 aaPredicted RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 UNC5DQ6UXZ4 953 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 NPAS3Q8IXF0 933 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 LAS2Q8IYD9 372 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 SYTL1Q8IYJ3 562 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 CFAP206Q8IYR0 622 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 SYNPOQ8N3V7 929 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 CHDHQ8NE62 594 aaPredicted RBP14.33□□□□□ -0.12
NUP54-217ENST00000514987 ZNF480Q8WV37 535 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 ING5Q8WYH8 240 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 NEIL2Q969S2 332 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 ZNF566Q969W8 418 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 TPT1P8Q9HAU6 139 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 PRM3Q9NNZ6 103 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 ADPRHL2Q9NX46 363 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 PCDHGA8Q9Y5G5 932 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 SNX5Q9Y5X3 404 aa14.33□□□□□ -0.12
NUP54-217ENST00000514987 KRT87PA6NCN2 255 aa14.32□□□□□ -0.12
NUP54-217ENST00000514987 GABRR3A8MPY1 467 aa14.32□□□□□ -0.12
NUP54-217ENST00000514987 PCDH7O60245 1069 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms