RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TMEM214Q6NUQ4 689 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 CEP128Q6ZU80 1094 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PPP1R32Q7Z5V6 425 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 ADAMTSL2Q86TH1 951 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PLD3Q8IV08 490 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 AFAP1L2Q8N4X5 818 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 CSNK1A1LQ8N752 337 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PPM1NQ8N819 430 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 AMER3Q8N944 861 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 KIAA1191Q96A73 305 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PTERQ96BW5 349 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PYCR2Q96C36 320 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 ABHD17AQ96GS6 310 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 GPR78Q96P69 363 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 CYTH2Q99418 400 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 SLC25A18Q9H1K4 315 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 IGSF5Q9NSI5 407 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 TXLNGQ9NUQ3 528 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 WDR70Q9NW82 654 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 IFT80Q9P2H3 777 aaPredicted RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 COPG2Q9UBF2 871 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 CTNNAL1Q9UBT7 734 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 PTBP2Q9UKA9 531 aaKnown RBP9.25□□□□□ -0.93
RNF4-221ENST00000513643 RELNP78509 3460 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 FLNCQ14315 2725 aa9.25□□□□□ -0.93
RNF4-221ENST00000513643 CCDC189A1A4V9 331 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 NPEPPSL1A6NEC2 478 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 B8ZZF3 427 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 PHGDHO43175 533 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 PRAMEF4O60810 478 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 ANXA5P08758 320 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CCDC166P0CW27 439 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 PIM1P11309 404 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 CDH1P12830 882 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MTHFD2P13995 350 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 SAT1P21673 171 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 ALAS2P22557 587 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MMP11P24347 488 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CRABP2P29373 138 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 GMPRP36959 345 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 BCL6P41182 706 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 OR1D4P47884 311 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 FOXL2P58012 376 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 C19orf57Q0VDD7 668 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 COL9A2Q14055 689 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 DSG2Q14126 1118 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 SLC9A5Q14940 896 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 OR4D1Q15615 310 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 PRAMEF9Q5VWM5 478 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MLIPQ5VWP3 458 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TCTN3Q6NUS6 607 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CCDC91Q7Z6B0 441 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MRGPREQ86SM8 312 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 THOC6Q86W42 341 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 C17orf64Q86WR6 236 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CTAGE3PQ8IX95 158 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CENPLQ8N0S6 344 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 SPATA6LQ8N4H0 392 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TMEM102Q8N9M5 508 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 EIF1ADQ8N9N8 165 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 TTC29Q8NA56 475 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 MFSD9Q8NBP5 474 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 PDPRQ8NCN5 879 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 LRRN4CLQ8ND94 238 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 SLC44A1Q8WWI5 657 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 NEIL2Q969S2 332 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TRIM44Q96DX7 344 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 IP6K3Q96PC2 410 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 ATOH8Q96SQ7 321 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 FMO2Q99518 471 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TMEM79Q9BSE2 394 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TRIM55Q9BYV6 548 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 SLC7A5P2Q9GIP4 190 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TGIF2Q9GZN2 237 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 SPNS1Q9H2V7 528 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CDC42EP4Q9H3Q1 356 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 ZNF304Q9HCX3 659 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 TXNDC16Q9P2K2 825 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MTRF1LQ9UGC7 380 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 TLK1Q9UKI8 766 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 PADI2Q9Y2J8 665 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 MRPS2Q9Y399 296 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 PCDHGA9Q9Y5G4 932 aaKnown RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 UBR5O95071 2799 aaPredicted RBP9.24□□□□□ -0.93
RNF4-221ENST00000513643 CCDC88CQ9P219 2028 aa9.24□□□□□ -0.93
RNF4-221ENST00000513643 CNTRLQ7Z7A1 2325 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 TRBC2A0A5B9 178 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 H0YIG0 161 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 K7EM74 188 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 SOCS6O14544 535 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 SUV39H1O43463 412 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 KLK8O60259 260 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 GUCA1CO95843 209 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 ALDOAP04075 364 aaKnown RBP9.23□□□□□ -0.93
RNF4-221ENST00000513643 PDGFAP04085 211 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 EIF2S1P05198 315 aaKnown RBP9.23□□□□□ -0.93
RNF4-221ENST00000513643 C2P06681 752 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 SMIM10L1P0DMW3 83 aa9.23□□□□□ -0.93
RNF4-221ENST00000513643 EPORP19235 508 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms