RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 DLX3O60479 287 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SBK3P0C264 359 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 MYL2P10916 166 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 NELFEP18615 380 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 ATP5F1P24539 256 aaPredicted RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 EEF1DP29692 281 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 GRIA3P42263 894 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ERVPABLB-1P60509 514 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 MAGOHP61326 146 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 YBX1P67809 324 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 HSD11B2P80365 405 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 NFKB2Q00653 900 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 CDC16Q13042 620 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 EIF3IQ13347 325 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 PDK4Q16654 411 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TMTC4Q5T4D3 741 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 FIGLAQ6QHK4 219 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ZYG11AQ6WRX3 759 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 RAB11FIP2Q7L804 512 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ADCK2Q7Z695 626 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TMPRSS11BQ86T26 416 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 FAM129CQ86XR2 697 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SLC22A9Q8IVM8 553 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ARMC2Q8NEN0 867 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 RDH11Q8TC12 318 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TCP10LQ8TDR4 215 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SLC5A11Q8WWX8 675 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 KLHL6Q8WZ60 621 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ARL8AQ96BM9 186 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 TLCD1Q96CP7 247 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SLC41A2Q96JW4 573 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 PKNOX2Q96KN3 472 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 FAM111AQ96PZ2 611 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 OR4K3Q96R72 315 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SH3GL2Q99962 352 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 DPH7Q9BTV6 452 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 PDE7BQ9NP56 450 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SSU72Q9NP77 194 aaKnown RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 KCNK9Q9NPC2 374 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 CUEDC1Q9NWM3 386 aaPredicted RBP9.63□□□□□ -0.87
NUP54-203ENST00000504173 ZNF446Q9NWS9 450 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SLC17A7Q9P2U7 560 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SH2B3Q9UQQ2 575 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 BTRCQ9Y297 605 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 LOXL2Q9Y4K0 774 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ASB1Q9Y576 335 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 ANGPTL3Q9Y5C1 460 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 KCNE2Q9Y6J6 123 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 PCM1Q15154 2024 aa9.63□□□□□ -0.87
NUP54-203ENST00000504173 SNRNP200O75643 2136 aaKnown RBP9.62□□□□□ -0.87
NUP54-203ENST00000504173 LRRC14BA6NHZ5 514 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 EFCAB7A8K855 629 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 H7BY64 318 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 DYNC1I1O14576 645 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 CLGNO14967 610 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PRPF4O43172 522 aaKnown RBP eCLIP9.62□□□□□ -0.87
NUP54-203ENST00000504173 PRAMEF10O60809 474 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 SIX3O95343 332 aaPredicted RBP9.62□□□□□ -0.87
NUP54-203ENST00000504173 JMJD7P0C870 316 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 EBLN1P0CF75 366 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 SFTPCP11686 197 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 CDH1P12830 882 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 CPA3P15088 417 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 NPPBP16860 134 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 HRH2P25021 359 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PIK3CGP48736 1102 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 KCNAB1Q14722 419 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PCBP2Q15366 365 aaKnown RBP eCLIP9.62□□□□□ -0.872e-6■■■■■ 27.6
NUP54-203ENST00000504173 ZIC1Q15915 447 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 LINC00303Q3SY05 128 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 C3orf38Q5JPI3 329 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 HIST2H2BCQ6DN03 193 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 FOXR1Q6PIV2 292 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 LSMEM2Q8N112 164 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 D2HGDHQ8N465 521 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 TEX9Q8N6V9 391 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 WDR36Q8NI36 951 aaKnown RBP9.62□□□□□ -0.87
NUP54-203ENST00000504173 PPP4R1Q8TF05 950 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 N4BP2L2Q92802 583 aaPredicted RBP9.62□□□□□ -0.87
NUP54-203ENST00000504173 NEIL2Q969S2 332 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 ZUFSPQ96AP4 578 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 CCDC126Q96EE4 140 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 TCTN2Q96GX1 697 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 ATP6V1G3Q96LB4 118 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PRAP1Q96NZ9 151 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PHF12Q96QT6 1004 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 SELENOSQ9BQE4 189 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 PLCD4Q9BRC7 762 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 TMEM184CQ9NVA4 438 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 GPRC5BQ9NZH0 403 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 COPG2Q9UBF2 871 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 SNX7Q9UNH6 387 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 SATB2Q9UPW6 733 aa9.62□□□□□ -0.87
NUP54-203ENST00000504173 IGKV1-8A0A0C4DH67 115 aa9.61□□□□□ -0.87
NUP54-203ENST00000504173 OR2A25A4D2G3 310 aa9.61□□□□□ -0.87
NUP54-203ENST00000504173 HMGB1P1B2RPK0 211 aaPredicted RBP9.61□□□□□ -0.87
NUP54-203ENST00000504173 E7EQ34 232 aa9.61□□□□□ -0.87
NUP54-203ENST00000504173 G3V2L1 256 aa9.61□□□□□ -0.87
NUP54-203ENST00000504173 PLD2O14939 933 aa9.61□□□□□ -0.87
NUP54-203ENST00000504173 TM9SF1O15321 606 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms