RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CHRNA10Q9GZZ6 450 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 KLHL25Q9H0H3 589 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 ACTR5Q9H9F9 607 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 SYBUQ9NX95 663 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 MARCH4Q9P2E8 410 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 TTC7AQ9ULT0 858 aaPredicted RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 CDYLQ9Y232 598 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 FARSAQ9Y285 508 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 MAN2B2Q9Y2E5 1009 aa6.55□□□□□ -1.36
CCDC88A-213ENST00000476903 HEATR5BQ9P2D3 2071 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 NUP210LQ5VU65 1888 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TCRBV7S3A2A0A539 114 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 ISM1B1AKI9 464 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 H3BMM5 538 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF749O43361 778 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RFPL1O75677 317 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 OR2B3O76000 313 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 VAPBO95292 243 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 KRT14P02533 472 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 DBHP09172 617 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RAB40ALP0C0E4 278 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TPBGLP0DKB5 382 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PAMP19021 973 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 AGXTP21549 392 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PKLRP30613 574 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 MAGEA6P43360 314 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 VPS41P49754 854 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 CSRP3P50461 194 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RAB28P51157 221 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 EIF3BP55884 814 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RPS18P62269 152 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 GPS1Q13098 491 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 KCNJ11Q14654 390 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TRIP13Q15645 432 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 KYNUQ16719 465 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC5A12Q1EHB4 618 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF789Q5FWF6 425 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PRAMEF17Q5VTA0 474 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 CASC4Q6P4E1 433 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TTC23LQ6PF05 361 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 OTOAQ7RTW8 1153 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 REC114Q7Z4M0 266 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SDCCAG8Q86SQ7 713 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TMEM135Q86UB9 458 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 TRIM73Q86UV7 250 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PTRH1Q86Y79 214 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 VRK3Q8IV63 474 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 APLFQ8IW19 511 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SYTL1Q8IYJ3 562 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RASGEF1CQ8N431 466 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RAB42Q8N4Z0 105 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC38A9Q8NBW4 561 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 CFAP61Q8NHU2 1237 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 FLVCR1-AS1Q8TAF5 88 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SKA2Q8WVK7 121 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 MAGOHBQ96A72 148 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 MFSD3Q96ES6 412 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 EAF1Q96JC9 268 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RUFY1Q96T51 708 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 C17orf62Q9BQA9 187 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 RAB11FIP5Q9BXF6 653 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 NLNQ9BYT8 704 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 P2RY12Q9H244 342 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 CHST8Q9H2A9 424 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 CLMPQ9H6B4 373 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 AKIRIN1Q9H9L7 192 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 ZNF71Q9NQZ8 489 aaPredicted RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 AP5S1Q9NUS5 200 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SPHK1Q9NYA1 384 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SAMD15Q9P1V8 674 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 ANAPC2Q9UJX6 822 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SLC39A10Q9ULF5 831 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PLAGL1Q9UM63 463 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 SNX7Q9UNH6 387 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PADI2Q9Y2J8 665 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 MRFAP1Q9Y605 127 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 AP1M2Q9Y6Q5 423 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 PMF1-BGLAPU3KQ54 211 aa6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 MDC1Q14676 2089 aaKnown RBP6.54□□□□□ -1.36
CCDC88A-213ENST00000476903 GOLGA6L10A0A0M3HER8 536 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 C9J4A7 227 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PYCARD-AS1I3L0S3 204 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PGRMC1O00264 195 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 RASGRF2O14827 1237 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ZSCAN9O15535 394 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ZSCAN12O43309 604 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 MLNP12872 115 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 OGNP20774 298 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CD9P21926 228 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ATP5DP30049 168 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 PEBP1P30086 187 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 FMO4P31512 558 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 COILP38432 576 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CCNFP41002 786 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 CASRP41180 1078 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TERF1P54274 439 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 ADARP55265 1226 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 TLE1Q04724 770 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 KLRB1Q12918 225 aa6.53□□□□□ -1.36
CCDC88A-213ENST00000476903 IL10RAQ13651 578 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms