RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SYDE1Q6ZW31 735 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 ZC3H7AQ8IWR0 971 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 PARP9Q8IXQ6 854 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 MIEF2Q96C03 454 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 MVB12AQ96EY5 273 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CFAP36Q96G28 342 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CCDC138Q96M89 665 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 PSMG3-AS1Q96PY0 264 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 BARD1Q99728 777 aaKnown RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 ATG10Q9H0Y0 220 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 PARVBQ9HBI1 364 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SLAMF7Q9NQ25 335 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 CCDC177Q9NQR7 707 aaPredicted RBP13.4□□□□□ -0.26
UPF3A-204ENST00000475218 TRPC4Q9UBN4 977 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 C3orf18Q9UK00 162 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 SAR1BQ9Y6B6 198 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 HIVEP3Q5T1R4 2406 aa13.4□□□□□ -0.26
UPF3A-204ENST00000475218 LCMT2O60294 686 aaKnown RBP13.39□□□□□ -0.27
UPF3A-204ENST00000475218 C8GP07360 202 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 COX6A1P12074 109 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 ITGA3P26006 1051 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 BCL6P41182 706 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 MRPS25P82663 173 aaKnown RBP13.39□□□□□ -0.27
UPF3A-204ENST00000475218 MAT1AQ00266 395 aaKnown RBP13.39□□□□□ -0.27
UPF3A-204ENST00000475218 CBLBQ13191 982 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 SP140Q13342 867 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 HIF1AQ16665 826 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 HECTD2Q5U5R9 776 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 ADCK2Q7Z695 626 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 EFCAB3Q8N7B9 438 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 PSMF1Q92530 271 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 TM4SF19Q96DZ7 209 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 OR4K3Q96R72 315 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 NAPGQ99747 312 aaPredicted RBP13.39□□□□□ -0.27
UPF3A-204ENST00000475218 TGIF2Q9GZN2 237 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 DRC3Q9H069 523 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 TMEM184CQ9NVA4 438 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 ASF1BQ9NVP2 202 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 PCDHGA10Q9Y5H3 936 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 ESPL1Q14674 2120 aa13.39□□□□□ -0.27
UPF3A-204ENST00000475218 KCNE1BA0A087WTH5 132 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 IDSB3KWA1 339 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 E7ESA3 106 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 SLC16A5O15375 505 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 SEMA7AO75326 666 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 VPS4BO75351 444 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 KLHL18O94889 574 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 ALPPP05187 535 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 NPPBP16860 134 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 RPL21P46778 160 aaKnown RBP13.38□□□□□ -0.27
UPF3A-204ENST00000475218 OCA2Q04671 838 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 NAE1Q13564 534 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 FRG1Q14331 258 aaKnown RBP13.38□□□□□ -0.27
UPF3A-204ENST00000475218 THEMIS2Q5TEJ8 643 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 LRRC8EQ6NSJ5 796 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 UGT3A1Q6NUS8 523 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 ANKMY2Q8IV38 441 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 PDIK1LQ8N165 341 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 CISD2Q8N5K1 135 aaKnown RBP13.38□□□□□ -0.27
UPF3A-204ENST00000475218 OR9A4Q8NGU2 314 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 MCOLN3Q8TDD5 553 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 LRRC39Q96DD0 335 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 MMABQ96EY8 250 aaPredicted RBP13.38□□□□□ -0.27
UPF3A-204ENST00000475218 MCMBPQ9BTE3 642 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 TRIM31Q9BZY9 425 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 ZNF160Q9HCG1 818 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 VPS4AQ9UN37 437 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 NAV2Q8IVL1 2488 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 SCN3AQ9NY46 2000 aa13.38□□□□□ -0.27
UPF3A-204ENST00000475218 FEZF1A0PJY2 475 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CTAGE15A4D2H0 777 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 JRKO75564 520 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 HPP00738 406 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CELA2AP08217 269 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 ACPPP15309 386 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 RGS4P49798 205 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 FAM53BQ14153 422 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 TMEM214Q6NUQ4 689 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 SBSNQ6UWP8 590 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CTAGE6Q86UF2 777 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 MYO1HQ8N1T3 1032 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 GPATCH11Q8N954 259 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 OR56A3Q8NH54 315 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 RERGQ96A58 199 aaPredicted RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 PYCR2Q96C36 320 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 LHPPQ9H008 270 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 SMYD2Q9NRG4 433 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 MOCS1Q9NZB8 636 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CDC14AQ9UNH5 594 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 VWA7Q9Y334 891 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CNTRLQ7Z7A1 2325 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CPAMD8Q8IZJ3 1885 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 LOC102723996A0A087X1L8 192 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 IGHV1-45A0A0A0MS14 117 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 PIAS1O75925 651 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 IPO13O94829 963 aaKnown RBP13.37□□□□□ -0.27
UPF3A-204ENST00000475218 CDH1P12830 882 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 EMP2P54851 167 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 ZNF460Q14592 562 aa13.37□□□□□ -0.27
UPF3A-204ENST00000475218 PPP1R3AQ16821 1122 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms