RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 RBM24Q9BX46 236 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 ESRP2Q9H6T0 727 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 LDAHQ9H6V9 325 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 EXO5Q9H790 373 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 ZNF696Q9H7X3 374 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 BPIFA1Q9NP55 256 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 PCSK1NQ9UHG2 260 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 TDRKHQ9Y2W6 561 aaKnown RBP7.5□□□□□ -1.21
USP54-211ENST00000474929 TESMINQ9Y4I5 508 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 KLK4Q9Y5K2 254 aa7.5□□□□□ -1.21
USP54-211ENST00000474929 RAI1Q7Z5J4 1906 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 A0A0U1RQJ8 604 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 TCRBV5S1A1TA0A578 114 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 SOWAHDA6NJG2 315 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 FAM166BA8MTA8 275 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 AHRRA9YTQ3 701 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 F8VZ95 297 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 CTIFO43310 598 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 ITGA10O75578 1167 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 EPPINO95925 133 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 EIF2S1P05198 315 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 UGT1A6P19224 532 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 CTSSP25774 331 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 PEBP1P30086 187 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 PCYT1AP49585 367 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 COMPP49747 757 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 SLC26A5P58743 744 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 RPL7AP62424 266 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 MPP1Q00013 466 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 FMO1Q01740 532 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 MEF2AQ02078 507 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 PPIDQ08752 370 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 USP10Q14694 798 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 PRTGQ2VWP7 1150 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ZNF468Q5VIY5 522 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 KLHL10Q6JEL2 608 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 SUSD1Q6UWL2 747 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 SEZ6L2Q6UXD5 910 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 LANCL3Q6ZV70 420 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 MON1BQ7L1V2 547 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ABHD13Q7L211 337 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 GLT6D1Q7Z4J2 308 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 POLNQ7Z5Q5 900 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ZNF227Q86WZ6 799 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 DEPDC4Q8N2C3 294 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ARMC10Q8N2F6 343 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 RAB42Q8N4Z0 105 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 LILRA3Q8N6C8 439 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 ZNF441Q8N8Z8 693 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 PSD4Q8NDX1 1056 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 MCUQ8NE86 351 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ZNF398Q8TD17 642 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ELP5Q8TE02 316 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 NELFBQ8WX92 580 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 ZNF830Q96NB3 372 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 COPS8Q99627 209 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 TTTY12Q9BZ98 90 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 UGT1A10Q9HAW8 530 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 BARX1Q9HBU1 254 aaPredicted RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP54-211ENST00000474929 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP54-211ENST00000474929 ALKBH4Q9NXW9 302 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 UTP6Q9NYH9 597 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 JKAMPQ9P055 326 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 DUSP10Q9Y6W6 482 aa7.49□□□□□ -1.21
USP54-211ENST00000474929 KMT2CQ8NEZ4 4911 aaKnown RBP7.49□□□□□ -1.21
USP54-211ENST00000474929 TRGV5A0A0B4J1U4 118 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 IGHV3-20A0A0C4DH32 117 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 H0YIG0 161 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 HSP90AA1P07900 732 aaKnown RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 MMP2P08253 660 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 ATP1B2P14415 290 aaPredicted RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 IL10P22301 178 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 CRYGSP22914 178 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 MIPP30301 263 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 PCK1P35558 622 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 MC3RP41968 323 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 DIO3P55073 304 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 GPR85P60893 370 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 RPS4XP62701 263 aaKnown RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 EEF1A1P68104 462 aaKnown RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 VLDLRP98155 873 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 MMRN1Q13201 1228 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 PNOCQ13519 176 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 FAM53BQ14153 422 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 SF1Q15637 639 aaKnown RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 MIDNQ504T8 468 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 BOLA3Q53S33 107 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 SFT2D3Q587I9 215 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 EEF1A1P5Q5VTE0 462 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 FOXD4L5Q5VV16 416 aaPredicted RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 SLC26A11Q86WA9 606 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 PM20D2Q8IYS1 436 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 NAXEQ8NCW5 288 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 OR2M7Q8NG81 312 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 IGFBPL1Q8WX77 278 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 FOXD4L4Q8WXT5 416 aaPredicted RBP7.48□□□□□ -1.21
USP54-211ENST00000474929 PIK3IP1Q96FE7 263 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 ZFP3Q96NJ6 502 aa7.48□□□□□ -1.21
USP54-211ENST00000474929 QRFPRQ96P65 431 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms