RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NUDT13Q86X67 352 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM219AQ8IW50 185 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 SLC34A3Q8N130 599 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 MARVELD2Q8N4S9 558 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 C17orf47Q8NEP4 570 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 OR11H4Q8NGC9 324 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 OCC1Q8TAD7 63 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 KCNE4Q8WWG9 221 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 HPSE2Q8WWQ2 592 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 DYRK2Q92630 601 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM162AQ96A26 154 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 THOC1Q96FV9 657 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 RMDN2Q96LZ7 410 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CITED2Q99967 270 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 FERMT1Q9BQL6 677 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CDH20Q9HBT6 801 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 DNAJC4Q9NNZ3 241 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 GKN1Q9NS71 199 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 GPR83Q9NYM4 423 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CLIP2Q9UDT6 1046 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 DAPK2Q9UIK4 370 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 NOL7Q9UMY1 257 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ZNF646O15015 1829 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 A0A087WV48 116 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 SIX3O95343 332 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 GPIP06744 558 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 ZFYP08048 801 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 ADRA2CP18825 462 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 EFNA1P20827 205 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 CA6P23280 308 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 ACAT1P24752 427 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 PSMA3P25788 255 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 MNDAP41218 407 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 PDX1P52945 283 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 NAGLUP54802 743 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 GSCP56915 257 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 MAPKAPK5-AS1Q8N8E1 139 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 VANGL1Q8TAA9 524 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 NSMAFQ92636 917 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 RASL10AQ92737 203 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 MR1Q95460 341 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM20AQ96MK3 541 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 JAKMIP1Q96N16 626 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 FNBP1Q96RU3 617 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 INTS14Q96SY0 518 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 SLC2A11Q9BYW1 496 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 WWTR1Q9GZV5 400 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 FN3KQ9H479 309 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 PPANQ9NQ55 473 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 DNAJB9Q9UBS3 223 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 ZDHHC2Q9UIJ5 367 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 SNX7Q9UNH6 387 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 WDR83OSQ9Y284 106 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 TMED3Q9Y3Q3 217 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 POMT1Q9Y6A1 747 aa2.61□□□□□ -1.99
CCDC88A-212ENST00000474059 LOC101059948A0A1B0GTJ6 334 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 HTR3EA5X5Y0 456 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ENO4A6NNW6 628 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM86B1E9PN63 330 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 H0Y626 953 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 CCER2I3L3R5 266 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ATP6AP2O75787 350 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 GSRP00390 522 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 IGHV3-13P01766 116 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 PRB2P02812 416 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 HSP90AB1P08238 724 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM86B2P0C5J1 330 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM58BPP0C7Q3 252 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 EPCAMP16422 314 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 CA4P22748 312 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 TNNT3P45378 269 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 GMPSP49915 693 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ODF4Q2M2E3 257 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM91A1Q658Y4 838 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 MOXD1Q6UVY6 613 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 Q6ZVH6 145 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 SPATA21Q7Z572 469 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 FAM9BQ8IZU0 186 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 SIX6OS1Q8N1H7 587 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 OR4K1Q8NGD4 311 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 OR5AP2Q8NGF4 316 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 OR4C3Q8NH37 302 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 PIGBQ92521 554 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ATP6V1E2Q96A05 226 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 CENPTQ96BT3 561 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 SPATA33Q96N06 139 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 DESI2Q9BSY9 194 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 GTPBP2Q9BX10 602 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ALDH8A1Q9H2A2 487 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 Q9H8V8 135 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 XAB2Q9HCS7 855 aaKnown RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 SDR39U1Q9NRG7 319 aaPredicted RBP2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 NUDT4Q9NZJ9 180 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 CACNG4Q9UBN1 327 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 GRID1Q9ULK0 1009 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 TNNQ9UQP3 1299 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 RIPK3Q9Y572 518 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 TRIM17Q9Y577 477 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 HEG1Q9ULI3 1381 aa2.6□□□□□ -1.99
CCDC88A-212ENST00000474059 ANKRD61A6NGH8 418 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms