RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ANXA8L1Q5VT79 327 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 CAPN13Q6MZZ7 669 aaPredicted RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 MED27Q6P2C8 311 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 TMEM179BQ7Z7N9 219 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 VPS37AQ8NEZ2 397 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZNF480Q8WV37 535 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 OR8D1Q8WZ84 308 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 CXorf40BQ96DE9 158 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 GABARAPL1Q9H0R8 117 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 POLR1BQ9H9Y6 1135 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 TCF20Q9UGU0 1960 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 EDDM13A0A1B0GTR0 161 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 LINC01553A4QN01 128 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 GABRR3A8MPY1 467 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 FOXE1O00358 373 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 SLC16A6O15403 523 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 NOBOXO60393 691 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 SEMG1P04279 462 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 ANXA4P09525 319 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 LAMP1P11279 417 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 CRHBPP24387 322 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 KDELR2P33947 212 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 RAD23AP54725 363 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 KCNAB2Q13303 367 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 IL18R1Q13478 541 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 RAB39AQ14964 217 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 C9orf64Q5T6V5 341 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 CPTPQ5TA50 214 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 PTOV1Q86YD1 416 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 DCP2Q8IU60 420 aaKnown RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 CFAP206Q8IYR0 622 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 HS3ST5Q8IZT8 346 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 C1orf52Q8N6N3 182 aaKnown RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 ARL10Q8N8L6 244 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 BADQ92934 168 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 NEIL2Q969S2 332 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 NUS1Q96E22 293 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 SGPP1Q9BX95 441 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 EHD1Q9H4M9 534 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 TRIM39Q9HCM9 518 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 CORO2BQ9UQ03 480 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 PCDHGA8Q9Y5G5 932 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 MUC22E2RYF6 1773 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 PRRT4C9JH25 899 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 YY2O15391 372 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 ABCB1P08183 1280 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 NPPBP16860 134 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 NUP107P57740 925 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 GRSF1Q12849 480 aaKnown RBP eCLIP14.54□□□□□ -0.08
LDLR-202ENST00000455727 SPIDRQ14159 915 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 BROXQ5VW32 411 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 PSRC1Q6PGN9 363 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 NXPE3Q969Y0 559 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 RSPRY1Q96DX4 576 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 EFCAB11Q9BUY7 163 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 TPT1P8Q9HAU6 139 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 TM9SF3Q9HD45 589 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 ITM2CQ9NQX7 267 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 ETAA1Q9NY74 926 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 TMEFF2Q9UIK5 374 aaPredicted RBP14.54□□□□□ -0.08
LDLR-202ENST00000455727 CDH7Q9ULB5 785 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 BTBD3Q9Y2F9 522 aa14.54□□□□□ -0.08
LDLR-202ENST00000455727 LOC100130705A0A1B0GUX0 176 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CPSF4O95639 269 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 IDSP22304 550 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 PBLDP30039 288 aaPredicted RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 TIA1P31483 386 aaKnown RBP eCLIP14.53□□□□□ -0.081e-7■□□□□ 9.9
LDLR-202ENST00000455727 HPCAL1P37235 193 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 YAP1P46937 504 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 RPS6KA3P51812 740 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 GABARAPL2P60520 117 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 TOP3AQ13472 1001 aaPredicted RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 ELAVL3Q14576 367 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 EIF4HQ15056 248 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 SKIV2LQ15477 1246 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 C6orf141Q5SZD1 244 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 OR2T5Q6IEZ7 315 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 DHRS4L2Q6PKH6 230 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 EIF3MQ7L2H7 374 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 LAS2Q8IYD9 372 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CLECL1Q8IZS7 167 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 SYNPOQ8N3V7 929 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 OR9A1PQ8NGU1 263 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 OR2T29Q8NH02 315 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 ARRDC3Q96B67 414 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 C12orf43Q96C57 262 aaKnown RBP14.53□□□□□ -0.08
LDLR-202ENST00000455727 TMEM9Q9P0T7 183 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 GPR34Q9UPC5 381 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 ORC6Q9Y5N6 252 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 C1orf226A1L170 272 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 MGAT4DA6NG13 374 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 TRIM64BA6NI03 449 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 HS6ST1O60243 411 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 ABCB7O75027 752 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 PAPLNO95428 1278 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 ZNF682O95780 498 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 RB1P06400 928 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 CDK4P11802 303 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 RYKP34925 604 aa14.53□□□□□ -0.08
LDLR-202ENST00000455727 PIGAP37287 484 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms