RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SLC44A4Q53GD3 710 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ARHGAP40Q5TG30 622 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 MLIPQ5VWP3 458 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 UNC5DQ6UXZ4 953 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 OXR1Q8N573 874 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 PIK3C3Q8NEB9 887 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 OR52B6Q8NGF0 335 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 WFDC5Q8TCV5 224 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 TOE1Q96GM8 510 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ZFRQ96KR1 1074 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ASB16Q96NS5 453 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 DPH7Q9BTV6 452 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SDHDO14521 159 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 RSL1D1O76021 490 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 HRH2P25021 359 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 HOXC8P31273 242 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 FEN1P39748 380 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 TNFRSF4P43489 277 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 VSX2P58304 361 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 IFI44LQ53G44 452 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 AP1ARQ63HQ0 302 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 GALNT5Q7Z7M9 940 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SIX5Q8N196 739 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SLC12A9Q9BXP2 914 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ARHGEF3Q9NR81 526 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 OBP2AQ9NY56 170 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 OAS3Q9Y6K5 1087 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 PRAMEF26H0Y7S4 382 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 TPP2P29144 1249 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 CXCL12P48061 93 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ABATP80404 500 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 RPA4Q13156 261 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SCARB2Q14108 478 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 C18orf21Q32NC0 220 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 KHDC1Q4VXA5 237 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 DCST1Q5T197 706 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 KCTD11Q693B1 232 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ZDHHC21Q8IVQ6 265 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SCAIQ8N9R8 606 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 LRCH3Q96II8 777 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ZSWIM3Q96MP5 696 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 DGCR6LQ9BY27 220 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 CRISPLD2Q9H0B8 497 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 DNAAF2Q9NVR5 837 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 FAM120CQ9NX05 1096 aaKnown RBP7.17□□□□□ -1.26
SYNE1-213ENST00000448038 ATXN10Q9UBB4 475 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 N6AMT1Q9Y5N5 214 aa7.17□□□□□ -1.26
SYNE1-213ENST00000448038 SDC3O75056 442 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 APBB3O95704 486 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SLC16A8O95907 504 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ALOX5P09917 674 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 TSPAN19P0C672 248 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ZDHHC11BP0C7U3 371 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 C8orf89P0DMQ9 161 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SAGP10523 405 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 MTHFD1P11586 935 aaKnown RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 JUPP14923 745 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 DSTNP60981 165 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 RIPK1Q13546 671 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF77Q15935 545 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ANKRD26P1Q6NSI1 321 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 NOXRED1Q6NXP6 359 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 CDC73Q6P1J9 531 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 Q6ZSR6 202 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 TMC8Q8IU68 726 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PIH1D2Q8WWB5 315 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 RLN3Q8WXF3 142 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 LRTOMTQ8WZ04 291 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PMEPA1Q969W9 287 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PTERQ96BW5 349 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SLC24A3Q9HC58 644 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 DKK3Q9UBP4 350 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 TESMINQ9Y4I5 508 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PRSS51A0A1B0GVH4 220 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ADAMDEC1O15204 470 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 KLK3P07288 261 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 CDK3Q00526 305 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 TDGQ13569 410 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 DGCR6Q14129 220 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PNCKQ6P2M8 343 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 NXPE4Q6UWF7 544 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PARM1Q6UWI2 310 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SLC36A4Q6YBV0 504 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 COMMD2Q86X83 199 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 APLFQ8IW19 511 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF540Q8NDQ6 660 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 FAM110BQ8TC76 370 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SLC38A4Q969I6 547 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 NMD3Q96D46 503 aaKnown RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 CENPNQ96H22 339 aaPredicted RBP7.16□□□□□ -1.26
SYNE1-213ENST00000448038 TGM7Q96PF1 710 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PKP4Q99569 1192 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 SLC7A8Q9UHI5 535 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PCDHGA4Q9Y5G9 962 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF860A6NHJ4 632 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 GLOD5A6NK44 160 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 IGFBP5P24593 272 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 PSMA3P25788 255 aa7.16□□□□□ -1.26
SYNE1-213ENST00000448038 RAB28P51157 221 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms