RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PLD5Q8N7P1 536 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 DNASE2BQ8WZ79 361 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ARHGEF2Q92974 986 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 APOPT1Q96IL0 206 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 HIC2Q96JB3 615 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SYT11Q9BT88 431 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 NUP85Q9BW27 656 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SLC25A18Q9H1K4 315 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PREBQ9HCU5 417 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 ARL15Q9NXU5 204 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 TAS2R14Q9NYV8 317 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 UPB1Q9UBR1 384 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 PCSK1NQ9UHG2 260 aa6.27□□□□□ -1.41
USP40-202ENST00000409945 SIRT4Q9Y6E7 314 aaPredicted RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 ATXN2Q99700 1313 aaKnown RBP6.27□□□□□ -1.41
USP40-202ENST00000409945 ABCA7Q8IZY2 2146 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 NUP205Q92621 2012 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 A0A0D9SEW6 157 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 LNP1A1A4G5 178 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SH2D7A6NKC9 451 aaPredicted RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 ZSCAN12O43309 604 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 KDELR3O43731 214 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 JTBO76095 146 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 GSRP00390 522 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 KRT7P08729 469 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 CD27P26842 260 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 MIPP30301 263 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 HCAR3P49019 387 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 IRX4P78413 519 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SETMARQ53H47 684 aaPredicted RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 CARD16Q5EG05 197 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 LIPMQ5VYY2 423 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 NEK5Q6P3R8 708 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 MRGPRGQ86SM5 289 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 ZNF683Q8IZ20 524 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 ZCCHC9Q8N567 271 aaKnown RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 FRMD1Q8N878 549 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SRFBP1Q8NEF9 429 aaKnown RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 KIF18AQ8NI77 898 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 ZNF564Q8TBZ8 553 aaPredicted RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 ADAMTS18Q8TE60 1221 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 RMDN1Q96DB5 314 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 ALG14Q96F25 216 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 GDAP1L1Q96MZ0 367 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SEMA4BQ9NPR2 832 aaPredicted RBP6.26□□□□□ -1.41
USP40-202ENST00000409945 SLC17A6Q9P2U8 582 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 OR51B4Q9Y5P0 310 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SNX10Q9Y5X0 201 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 CFAP54Q96N23 3096 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 SPTBN4Q9H254 2564 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 CEP192Q8TEP8 1941 aa6.26□□□□□ -1.41
USP40-202ENST00000409945 A0A087X0T9 212 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 C4orf47A7E2U8 309 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 SNAP91O60641 907 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 POP4O95707 220 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 FAM228BP0C875 321 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ACSL1P33121 698 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 CYLC1P35663 651 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 HNF1BP35680 557 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 MTNR1AP48039 350 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 NUMBP49757 651 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 GALCP54803 685 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 RHOAP61586 193 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ALKBH1Q13686 389 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 IL13RA2Q14627 380 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 NCEH1Q6PIU2 408 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 SLC22A25Q6T423 547 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TMCO3Q6UWJ1 677 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 LINGO4Q6UY18 593 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 NLRP14Q86W24 1093 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 LRRC49Q8IUZ0 686 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 UMODL1-AS1Q8N2C9 162 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TMEM217Q8N7C4 229 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 ENDOVQ8N8Q3 282 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 NIPA2Q8N8Q9 360 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 OR2AP1Q8NGE2 309 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 TEKT4Q8WW24 435 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 SLC9A6Q92581 669 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 HSPH1Q92598 858 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 RAB7BQ96AH8 199 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FEM1CQ96JP0 617 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FYTTD1Q96QD9 318 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 PANX2Q96RD6 677 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 BAG1Q99933 345 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 DUSP26Q9BV47 211 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 SNRNP25Q9BV90 132 aaKnown RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 C1QTNF7Q9BXJ2 289 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 THAP2Q9H0W7 228 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 NEUROG2Q9H2A3 272 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 C6orf106Q9H6K1 298 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 ZDHHC6Q9H6R6 413 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 Q9N2J8 555 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 UBA2Q9UBT2 640 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 AASSQ9UDR5 926 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 DOCK4Q8N1I0 1966 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 MUC22E2RYF6 1773 aaPredicted RBP6.25□□□□□ -1.41
USP40-202ENST00000409945 CXorf65A6NEN9 183 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 USP27XA6NNY8 438 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 FAM72CH0Y354 149 aa6.25□□□□□ -1.41
USP40-202ENST00000409945 DFFAO00273 331 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms