RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PRKAG1P54619 331 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 C2orf80Q0P641 193 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 MEX3DQ86XN8 651 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 WDR48Q8TAF3 677 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 RPL3LQ92901 407 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 NXPE3Q969Y0 559 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 MBOAT4Q96T53 435 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 DCAF13Q9NV06 445 aaKnown RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 STOX2Q9P2F5 926 aaPredicted RBP12.94□□□□□ -0.34
VPS54-203ENST00000409558 ST14Q9Y5Y6 855 aa12.94□□□□□ -0.34
VPS54-203ENST00000409558 COL4A6Q14031 1691 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 ARNTLO00327 626 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CEBPBP17676 345 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 PLA2G16P53816 162 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 ADARB1P78563 741 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 ARHGEF6Q15052 776 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 BTLAQ7Z6A9 289 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 TMCO5AQ8N6Q1 288 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 TSPEARQ8WU66 669 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CLP1Q92989 425 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 NRBF2Q96F24 287 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 KRT84Q9NSB2 600 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CCDC88CQ9P219 2028 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 RECQL5O94762 991 aaPredicted RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 BMP10O95393 424 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 PSMB5P28074 263 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 DGKGP49619 791 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CDH12P55289 794 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 TTC23Q5W5X9 447 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 ZNF783Q6ZMS7 281 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CCDC149Q6ZUS6 474 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 PARS2Q7L3T8 475 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 DCP2Q8IU60 420 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 PACRGLQ8N7B6 248 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CHDHQ8NE62 594 aaPredicted RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 OR7G3Q8NG95 312 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 RAB8BQ92930 207 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 NODALQ96S42 347 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 TRBV5-4A0A0C4DH59 114 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 LOC100506127A0A0U1RQW1 187 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CXCL10P02778 98 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 PCCBP05166 539 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 RRM2P31350 389 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 GRIK2Q13002 908 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 GAB1Q13480 694 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 ARHGAP15Q53QZ3 475 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 KLHL17Q6TDP4 642 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 CLIP4Q8N3C7 705 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 RBM4BQ9BQ04 359 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 CPPED1Q9BRF8 314 aaPredicted RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 RBM4Q9BWF3 364 aaKnown RBP12.93□□□□□ -0.34
VPS54-203ENST00000409558 IL36AQ9UHA7 158 aa12.93□□□□□ -0.34
VPS54-203ENST00000409558 BOLA2-SMG1P6H3BVE0 249 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 CTSAP10619 480 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 MAT2AP31153 395 aaKnown RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 TBPL1P62380 186 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TRIM46Q7Z4K8 759 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 SPARTQ8N0X7 666 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 USP7Q93009 1102 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 DUS3LQ96G46 650 aaKnown RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 YIPF4Q9BSR8 244 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 FUNDC2Q9BWH2 189 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 XKR8Q9H6D3 395 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 REEP1Q9H902 201 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 POLE4Q9NR33 117 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 KCNE2Q9Y6J6 123 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 OTOL1A6NHN0 477 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 ATG13O75143 517 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 SCELO95171 688 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 C8GP07360 202 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 C21orf59P57076 290 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 NUP107P57740 925 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TAS2R50P59544 299 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TP53BP2Q13625 1128 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 SPCS2Q15005 226 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 LYPLAL1Q5VWZ2 237 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 TTC29Q8NA56 475 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 VANGL1Q8TAA9 524 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 STON2Q8WXE9 905 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 GLYATL1Q969I3 302 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 HERC2P3Q9BVR0 1158 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 OSBPL10Q9BXB5 764 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 OSBPL6Q9BZF3 934 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 KCNH6Q9H252 994 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 PAK1IP1Q9NWT1 392 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 CORINQ9Y5Q5 1042 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 PNMA8CA0A1B0GUJ8 204 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 ERN1O75460 977 aaKnown RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 CRHBPP24387 322 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 KDELR2P33947 212 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 RNF168Q8IYW5 571 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 GLB1L3Q8NCI6 653 aaPredicted RBP12.92□□□□□ -0.34
VPS54-203ENST00000409558 FAM81AQ8TBF8 368 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 PROX1Q92786 737 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 ABCG4Q9H172 646 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 CD320Q9NPF0 282 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 HS3ST2Q9Y278 367 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 KLHL20Q9Y2M5 609 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 ZNF197O14709 1029 aa12.92□□□□□ -0.34
VPS54-203ENST00000409558 FABP3P05413 133 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms