RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CYP4Z2PQ8N1L4 340 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 C10orf111Q8N326 155 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ING5Q8WYH8 240 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 VMP1Q96GC9 406 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF300Q96RE9 604 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PRKD2Q9BZL6 878 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 IPPKQ9H8X2 491 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 CCDC177Q9NQR7 707 aaPredicted RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 RAPGEFL1Q9UHV5 662 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 MYOFQ9NZM1 2061 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 MEIOCA2RUB1 952 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF840PA6NDX5 716 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 IGLV3-25P01717 112 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 RPLP0P05388 317 aaKnown RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 HLA-DPA1P20036 260 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 PPP2R2BQ00005 443 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 NUMA1Q14980 2115 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 VEPH1Q14D04 833 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ACOX1Q15067 660 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF605Q86T29 641 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 NLRP8Q86W28 1048 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 FAM20CQ8IXL6 584 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GHDCQ8N2G8 530 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF366Q8N895 744 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 OR4L1Q8NH43 312 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 GPR151Q8TDV0 419 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 TRIM63Q969Q1 353 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 INPP5KQ9BT40 448 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 MRPL9Q9BYD2 267 aaKnown RBP12.57□□□□□ -0.4
PTPRN-202ENST00000409251 IL1RAPQ9NPH3 570 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 WWOXQ9NZC7 414 aa12.57□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 TYW5A2RUC4 315 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ISPDA4D126 451 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 LCHNA4D1U4 455 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 TEX46H3BTG2 121 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 PSMD3O43242 534 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 AP2A2O94973 939 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 NDST3O95803 873 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SLC11A2P49281 568 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CCT3P49368 545 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ERVPABLB-1P60509 514 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 NTHL1P78549 312 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF177Q13360 481 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 COL9A2Q14055 689 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SIGIRRQ6IA17 410 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 OR4F6Q8NGB9 312 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SLC38A4Q969I6 547 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 MSANTD3Q96H12 275 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 DIRAS2Q96HU8 199 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 UBXN10Q96LJ8 280 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 MMP27Q9H306 513 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 NSUN3Q9H649 340 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF334Q9HCZ1 680 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ABCB8Q9NUT2 735 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF224Q9NZL3 707 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 WDR87Q6ZQQ6 2873 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 GRXCR1A8MXD5 290 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 BTN3A3O00478 584 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 PCDHGA12O60330 932 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ERN1O75460 977 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CLTBP09497 229 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 TSPAN19P0C672 248 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 HTR3AP46098 478 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 DAPP51397 102 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 LBX1P52954 281 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CDK10Q15131 360 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SF1Q15637 639 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 KANK2Q63ZY3 851 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 TTC23LQ6PF05 361 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 TMPRSS11AQ6ZMR5 421 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 MBOAT1Q6ZNC8 495 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 OR6F1Q8NGZ6 308 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF461Q8TAF7 563 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 WFDC5Q8TCV5 224 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF675Q8TD23 568 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SLC39A13Q96H72 371 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 FCRL5Q96RD9 977 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SLC30A2Q9BRI3 323 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CCM2Q9BSQ5 444 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CINPQ9BW66 212 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 PAK6Q9NQU5 681 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 RHCGQ9UBD6 479 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CLEC4EQ9ULY5 219 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ATG2BQ96BY7 2078 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 EVPLLA8MZ36 301 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 HAT1O14929 419 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 FGF10O15520 208 aaPredicted RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ACSL4O60488 711 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 C7P10643 843 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 UROSP10746 265 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 PTGS2P35354 604 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SOX3P41225 446 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ST3GAL4Q11206 333 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CDH18Q13634 790 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 PDCD11Q14690 1871 aaKnown RBP12.56□□□□□ -0.4
PTPRN-202ENST00000409251 ZNF181Q2M3W8 571 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 SLC34A3Q8N130 599 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 KBTBD8Q8NFY9 601 aa12.56□□□□□ -0.4
PTPRN-202ENST00000409251 CWH43Q9H720 699 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms