RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HEATR5BQ9P2D3 2071 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 HAT1O14929 419 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 TRIM13O60858 407 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ALBP02768 609 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 CD63P08962 238 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 GALNSP34059 522 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 BCL6P41182 706 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 TRA2BP62995 288 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 PRKAA1Q13131 559 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 TBC1D25Q3MII6 688 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 SH2D4BQ5SQS7 431 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 NKAIN2Q5VXU1 208 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 MRPL14Q6P1L8 145 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ARMC10Q8N2F6 343 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 ATXN7L3BQ96GX2 97 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 MS4A8Q9BY19 250 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 LHX9Q9NQ69 397 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 PPIEQ9UNP9 301 aaKnown RBP6.71□□□□□ -1.34
LIMA1-202ENST00000394943 GMEB1Q9Y692 573 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 KCNE2Q9Y6J6 123 aa6.71□□□□□ -1.34
LIMA1-202ENST00000394943 CPAMD8Q8IZJ3 1885 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SPAARA0A1B0GVQ0 90 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 DSCR3O14972 297 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 MYL2P10916 166 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 MYF5P13349 255 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 POLR2CP19387 275 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 CLCQ05315 142 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 IFFO1Q0D2I5 559 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 AP1ARQ63HQ0 302 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 COX15Q7KZN9 410 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 C17orf64Q86WR6 236 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PARP9Q8IXQ6 854 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PTGR2Q8N8N7 351 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 GBP5Q96PP8 586 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SPNS1Q9H2V7 528 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PDE7BQ9NP56 450 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PLAGL1Q9UM63 463 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 ASCC3Q8N3C0 2202 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 E7EQ34 232 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TGDSO95455 350 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 OTCP00480 354 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SERPINE1P05121 402 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 FOLR1P15328 257 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SERPINB4P48594 390 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 AGTR2P50052 363 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 ARSFP54793 590 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TBL3Q12788 808 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 NAE1Q13564 534 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 CACHD1Q5VU97 1274 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PRMT9Q6P2P2 845 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 CEACAM20Q6UY09 585 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 UBE3DQ7Z6J8 389 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SRRM1Q8IYB3 904 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TRPV3Q8NET8 790 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 OR1L3Q8NH93 324 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 UHMK1Q8TAS1 419 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 ADAMTS18Q8TE60 1221 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF473Q8WTR7 871 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 CKAP2Q8WWK9 683 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 NTNG2Q96CW9 530 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 GATA5Q9BWX5 397 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 DPH1Q9BZG8 443 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 XKR8Q9H6D3 395 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 CUEDC1Q9NWM3 386 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 OPTCQ9UBM4 332 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SRPK3Q9UPE1 567 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 LOXL2Q9Y4K0 774 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 FER1L5A0AVI2 2057 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 MDC1Q14676 2089 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 EPB42P16452 691 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 EEF1DP29692 281 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 HPDP32754 393 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 DOC2AQ14183 400 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 PLCL1Q15111 1095 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 C18orf21Q32NC0 220 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 C10orf107Q8IVU9 208 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TRIM42Q8IWZ5 723 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TRPC4APQ8TEL6 797 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 REPS1Q96D71 796 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SIKE1Q9BRV8 207 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 ACBD3Q9H3P7 528 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 DDX31Q9H8H2 851 aaKnown RBP6.7□□□□□ -1.34
LIMA1-202ENST00000394943 LYRM4Q9HD34 91 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 TAC3Q9UHF0 121 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 SLC22A14Q9Y267 594 aa6.7□□□□□ -1.34
LIMA1-202ENST00000394943 FOXO6A8MYZ6 492 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 CASC3O15234 703 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 HCRTR1O43613 425 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 FOXS1O43638 330 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 LCMT2O60294 686 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 NSA2O95478 260 aaKnown RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 S100BP04271 92 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PSMB5P28074 263 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ETV5P41161 510 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PPP2R2AP63151 447 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 SIM1P81133 766 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-202ENST00000394943 ABHD18Q0P651 414 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 KIAA0040Q15053 153 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 PAGE2BQ5JRK9 111 aa6.69□□□□□ -1.34
LIMA1-202ENST00000394943 FRA10AC1Q70Z53 315 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms