RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PIGMQ9H3S5 423 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 PCDHB3Q9Y5E6 796 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 TLX3O43711 291 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 NOBOXO60393 691 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 TMEM69Q5SWH9 247 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 GSG1LQ6UXU4 331 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 C1orf186Q6ZWK4 172 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 MARCH9Q86YJ5 346 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 LFNGQ8NES3 379 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 DNERQ8NFT8 737 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 PTCHD1Q96NR3 888 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 OR10H1Q9Y4A9 318 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 DAGLAQ9Y4D2 1042 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 LYRM1O43325 122 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 ST3GAL4Q11206 333 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 HJURPQ8NCD3 748 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 CACNG6Q9BXT2 260 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 SDCBP2Q9H190 292 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 ABCB8Q9NUT2 735 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 RCCD1A6NED2 376 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 ARL5CA6NH57 179 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 MBP02144 154 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 OAZ1P54368 228 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 SNRPD1P62314 119 aaKnown RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 SEZ6LQ9BYH1 1024 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 TMEM39BQ9GZU3 492 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 OR51J1Q9H342 316 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 KANSL3Q9P2N6 904 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 BEST1O76090 585 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 SUPT20HL2P0C7V6 817 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 RPL10P27635 214 aaKnown RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 CD86P42081 329 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 USP41Q3LFD5 358 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 ZSWIM9Q86XI8 627 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 C8orf37Q96NL8 207 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 ALPK1Q96QP1 1244 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 CPQQ9Y646 472 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 RBBP9O75884 186 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 TXNP10599 105 aaKnown RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 DLX5P56178 289 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 GTF2BQ00403 316 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 DCST2Q5T1A1 773 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 UBE2R2Q712K3 238 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 TRMT11Q7Z4G4 463 aaKnown RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 KIAA1143Q96AT1 154 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 MFSD14AQ96MC6 490 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 SLC7A4O43246 635 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 PLA2G16P53816 162 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 OR5H6Q8NGV6 325 aa12.29□□□□□ -0.44
COL6A3-203ENST00000353578 GATA5Q9BWX5 397 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 WDR55Q9H6Y2 383 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 MRM3Q9HC36 420 aaKnown RBP12.29□□□□□ -0.44
COL6A3-203ENST00000353578 HTR3BO95264 441 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ESR1P03372 595 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CACNG1Q06432 222 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 NTRK2Q16620 822 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF630Q2M218 657 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ACBD6Q9BR61 282 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 NID2Q14112 1375 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 FAM208AQ9UK61 1670 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 FFAR3O14843 346 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 GPR42O15529 346 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 RNASEH2AO75792 299 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 MARCKSL1P49006 195 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 SLC25A52Q3SY17 297 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 MFSD14CQ5VZR4 134 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 SLC35F4A4IF30 521 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CBX4O00257 560 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 IRF6O14896 467 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ACADMP11310 421 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 DCLRE1AQ6PJP8 1040 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TMEM205Q6UW68 189 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TREML1Q86YW5 311 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 NPLOC4Q8TAT6 608 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 LNX1Q8TBB1 728 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 STYXQ8WUJ0 223 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 AUTS2Q8WXX7 1259 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 RAB39BQ96DA2 213 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CYP2S1Q96SQ9 504 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 TVP23AA6NH52 213 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 EEDO75530 441 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 WDR4P57081 412 aaKnown RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PRSS55Q6UWB4 352 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ZNF627Q7L945 461 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CD163Q86VB7 1156 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 OR2T11Q8NH01 316 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ARPC5LQ9BPX5 153 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CNTN3Q9P232 1028 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CALCRP30988 508 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 GLP1RP43220 463 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CAP1Q01518 475 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 CLPPQ16740 277 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-203ENST00000353578 MON1BQ7L1V2 547 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PIDD1Q9HB75 910 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 BTRCQ9Y297 605 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ASTN1O14525 1302 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 PREX1Q8TCU6 1659 aa12.28□□□□□ -0.44
COL6A3-203ENST00000353578 ACKR2O00590 384 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms