RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IPPQ9Y573 584 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PCDHGA2Q9Y5H1 932 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TNPO3Q9Y5L0 923 aaKnown RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 SLC35F4A4IF30 521 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TMEM229AB2RXF0 380 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NT5C1B-RDH14C9J2C7 533 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PLA2G10O15496 165 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 GPR39O43194 453 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 RGS14O43566 566 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 KCNK5O95279 499 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 OTCP00480 354 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ZNF30P17039 623 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 HLA-DPA1P20036 260 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 CHMP24386 653 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TACR1P25103 407 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 KDELR2P33947 212 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 GDF5P43026 501 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 GNPDA1P46926 289 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PXNP49023 591 aaPredicted RBP6.58□□□□□ -1.36
VPS39-202ENST00000348544 KCNQ1P51787 676 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 OLR1P78380 273 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SMARCB1Q12824 385 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 VMACQ2NL98 169 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.58□□□□□ -1.36
VPS39-202ENST00000348544 SLC35F1Q5T1Q4 408 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NADSYN1Q6IA69 706 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TAPT1Q6NXT6 567 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SCD5Q86SK9 330 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PLCZ1Q86YW0 608 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TMC8Q8IU68 726 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FBXL6Q8N531 539 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PPTC7Q8NI37 304 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FATE1Q969F0 183 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 SLC39A13Q96H72 371 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 MS4A3Q96HJ5 214 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FRMD6Q96NE9 622 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 WDFY2Q96P53 400 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 OPALINQ96PE5 141 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TRIB3Q96RU7 358 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 FEVQ99581 238 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 CCM2Q9BSQ5 444 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 MIXL1Q9H2W2 232 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NMUR1Q9HB89 426 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 HHATLQ9HCP6 504 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 MS4A12Q9NXJ0 267 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 ASIC5Q9NY37 505 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 PATJQ8NI35 1801 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 DOCK4Q8N1I0 1966 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 TTC3P53804 2025 aa6.58□□□□□ -1.36
VPS39-202ENST00000348544 NUP214P35658 2090 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 EFCAB10A6NFE3 127 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TSPAN3O60637 253 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 NOS1APO75052 506 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 COL6A1P12109 1028 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 NAGAP17050 411 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 S100A3P33764 101 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 IL12RB1P42701 662 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 POU6F2P78424 691 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 SCN1BQ07699 218 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MADCAM1Q13477 382 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 GPR162Q16538 588 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 PXDC1Q5TGL8 231 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SAXO2Q658L1 398 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 FAM171BQ6P995 826 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 AFTPHQ6ULP2 937 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CBLL1Q75N03 491 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EIF3MQ7L2H7 374 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 ZNF605Q86T29 641 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 AMIGO1Q86WK6 493 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CIR1Q86X95 450 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 PGBD3Q8N328 593 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SLC5A8Q8N695 610 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EFHBQ8N7U6 833 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MDGA1Q8NFP4 955 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 POP5Q969H6 163 aaKnown RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 CCDC120Q96HB5 630 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CRELD1Q96HD1 420 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 EPYCQ99645 322 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS39-202ENST00000348544 ABCG8Q9H221 673 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 ABHD16BQ9H3Z7 469 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SNTG1Q9NSN8 517 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SLC23A1Q9UHI7 598 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 RIMKLBQ9ULI2 386 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 ACTL7AQ9Y615 435 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MICAL3Q7RTP6 2002 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 C11orf97A0A1B0GVM6 126 aaPredicted RBP6.57□□□□□ -1.36
VPS39-202ENST00000348544 OR5K3A6NET4 321 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 E5RI56 91 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 TRIM77I1YAP6 450 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 PLK4O00444 970 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 MANBAO00462 879 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SEC14L5O43304 696 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 GUCA1CO95843 209 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 C1QBP02746 253 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 PSKH1P11801 424 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 ALAS2P22557 587 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 HLA-DMAP28067 261 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 SSTR4P31391 388 aa6.57□□□□□ -1.36
VPS39-202ENST00000348544 CSTF2P33240 577 aaKnown RBP eCLIP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms