RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 BTN1A1Q13410 526 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 LARS2Q15031 903 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 SF3A2Q15428 464 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 SMN1Q16637 294 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 PYDC2Q56P42 97 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 IGSF11Q5DX21 431 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 MPP7Q5T2T1 576 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 HECTD2Q5U5R9 776 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 ANKS6Q68DC2 871 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 LAIR1Q6GTX8 287 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 APOBEC3HQ6NTF7 200 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 MPZL3Q6UWV2 235 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 ZNF600Q6ZNG1 722 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 CFAP77Q6ZQR2 320 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 DPH6Q7L8W6 267 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 TMEM179BQ7Z7N9 219 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 SLC37A3Q8NCC5 494 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 OR8K3Q8NH51 312 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 APH1BQ8WW43 257 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 SMG7Q92540 1137 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 TEPSINQ96N21 525 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 ZNF599Q96NL3 588 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 THUMPD3Q9BV44 507 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 NIFKQ9BYG3 293 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 TUBB1Q9H4B7 451 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 ELOVL6Q9H5J4 265 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 TFB2MQ9H5Q4 396 aaKnown RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 ASB7Q9H672 318 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 REEP1Q9H902 201 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 JPH1Q9HDC5 661 aaPredicted RBP7.89□□□□□ -1.15
ATG4A-201ENST00000343524 RASSF1Q9NS23 344 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 RDH8Q9NYR8 311 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 FNIP2Q9P278 1114 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 RPS6KA6Q9UK32 745 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 INVSQ9Y283 1065 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 MAN2B2Q9Y2E5 1009 aa7.89□□□□□ -1.15
ATG4A-201ENST00000343524 A0A1B0GVI7 797 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 UBA6A0AVT1 1052 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SH3D21A4FU49 640 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 E9PQ18 207 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ZNF670-ZNF695F2Z2N8 137 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ABCD4O14678 606 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PCDHGA12O60330 932 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 MPZL2O60487 215 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 CCNDBP1O95273 360 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 FABP3P05413 133 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 MYCLP12524 364 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PCSK2P16519 638 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 LHCGRP22888 699 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PSMA1P25786 263 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 CRKP46108 304 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 HAAOP46952 286 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SULT1E1P49888 294 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PPP3R1P63098 170 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 RPP38P78345 283 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 OLIG2Q13516 323 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 TP53BP2Q13625 1128 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 EXOSC2Q13868 293 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 GTF2H3Q13889 308 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ELOAQ14241 798 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ZNF169Q14929 603 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 VEPH1Q14D04 833 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 TSNQ15631 228 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 TSTQ16762 297 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 DUSP6Q16828 381 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SLC25A52Q3SY17 297 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SEZ6Q53EL9 994 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PRAMEF18Q5VWM3 479 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SWSAP1Q6NVH7 229 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 FAHD1Q6P587 224 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ERICH5Q6P6B1 374 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 KDELC1Q6UW63 502 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PAMR1Q6UXH9 720 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 RPS27LQ71UM5 84 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 LAX1Q8IWV1 398 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 CPA6Q8N4T0 437 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ATAD1Q8NBU5 361 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 CLRN3Q8NCR9 226 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PROKR1Q8TCW9 393 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SLC13A3Q8WWT9 602 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PHF21AQ96BD5 680 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 QRFPRQ96P65 431 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SORCS2Q96PQ0 1159 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SLC9A7Q96T83 725 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 CDX2Q99626 313 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 MGLLQ99685 303 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 P2RY13Q9BPV8 354 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 PDCD2LQ9BRP1 358 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 RHNO1Q9BSD3 238 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 GSX2Q9BZM3 304 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 SHARPINQ9H0F6 387 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 MED28Q9H204 178 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 NXF3Q9H4D5 531 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 ANKRA2Q9H9E1 313 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 RPF1Q9H9Y2 349 aaKnown RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 POLMQ9NP87 494 aaPredicted RBP7.88□□□□□ -1.15
ATG4A-201ENST00000343524 TREX1Q9NSU2 369 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 HPF1Q9NWY4 346 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 C1orf109Q9NX04 203 aa7.88□□□□□ -1.15
ATG4A-201ENST00000343524 MIOSQ9NXC5 875 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms