RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TSPAN8P19075 237 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ITPKAP23677 461 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 TAS2R31P59538 309 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 LOC100509620A0A075B734 347 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SCNN1GP51170 649 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PRMT2P55345 433 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ENPP2Q13822 863 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF101Q8IZC7 436 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PYURFQ96I23 114 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 GPR21Q99679 349 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM246Q9BRR3 403 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 CXCL11O14625 94 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 LYPLA2O95372 231 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SCGB1D2O95969 90 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SLC6A9P48067 706 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 SLC15A3Q8IY34 581 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 FAM83DQ9H4H8 585 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 B3GAT2Q9NPZ5 323 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 RIMKLBQ9ULI2 386 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 PCDHGA8Q9Y5G5 932 aa13.92□□□□□ -0.18
COL7A1-201ENST00000328333 H3BSA7 217 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ADRB2P07550 413 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HGSNATQ68CP4 663 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ANKRD46Q86W74 232 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ARHGAP12Q8IWW6 846 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 CHPT1Q8WUD6 406 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 RGMAQ96B86 450 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 EFCAB11Q9BUY7 163 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 MAGEH1Q9H213 219 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 PPM1HQ9ULR3 514 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 NME7Q9Y5B8 376 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 F5H0A9 414 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 NARSO43776 548 aaKnown RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 PRNPP04156 253 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TAS2R40P59535 323 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TAS2R50P59544 299 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 EN1Q05925 392 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ST3GAL4Q11206 333 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 EPGNQ6UW88 154 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 CEP97Q8IW35 865 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 OR8J3Q8NGG0 315 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 FCRL2Q96LA5 508 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 QPCTLQ9NXS2 382 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 MALT1Q9UDY8 824 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HCN4Q9Y3Q4 1203 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TBL1XO60907 577 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 MT-CO2P00403 227 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HTR1AP08908 422 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 MAP2K3P46734 347 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HSPB3Q12988 150 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM69Q5SWH9 247 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 SCML4Q8N228 414 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 YIPF4Q9BSR8 244 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TMED9Q9BVK6 235 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 MRM3Q9HC36 420 aaKnown RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 STARD7Q9NQZ5 370 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ADH1AP07327 375 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 BEST3Q8N1M1 668 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 LIN37Q96GY3 246 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 BRINP2Q9C0B6 783 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 SLC5A7Q9GZV3 580 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 CACNA1SQ13698 1873 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TNFRSF10BO14763 440 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 PRAF2O60831 178 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HOXB9P17482 250 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 PRKACAP17612 351 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TGFBIQ15582 683 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF317Q96PQ6 595 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HNRNPABQ99729 332 aaKnown RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 OR51V1Q9H2C8 321 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ARL5AQ9Y689 179 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 GSTM2P28161 218 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF157P51786 506 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 CDH8P55286 799 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ZNF630Q2M218 657 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 SCIMPQ6UWF3 145 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 ZSWIM9Q86XI8 627 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 JAGN1Q8N5M9 183 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HASPINQ8TF76 798 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 HERC2P3Q9BVR0 1158 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TVP23BQ9NYZ1 205 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 C13orf42A0A1B0GVH6 325 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 SPIN3Q5JUX0 258 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 TMEM139Q8IV31 216 aa13.91□□□□□ -0.18
COL7A1-201ENST00000328333 PAQR5Q9NXK6 330 aaPredicted RBP13.91□□□□□ -0.18
COL7A1-201ENST00000328333 AVPR1BP47901 424 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 PUS10Q3MIT2 529 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 GATA5Q9BWX5 397 aaPredicted RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 MAGIXQ9H6Y5 334 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 FAM86C1Q9NVL1 165 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 NUP98P52948 1817 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 NAP1L6A6NFF2 107 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 SCAMP3O14828 347 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 PROM1O43490 865 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 AKR1A1P14550 325 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 ST3GAL3Q11203 375 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 TSTQ16762 297 aaKnown RBP13.9□□□□□ -0.18
COL7A1-201ENST00000328333 DUOXA1Q1HG43 343 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 LRRC66Q68CR7 880 aa13.9□□□□□ -0.18
COL7A1-201ENST00000328333 UBE2J2Q8N2K1 259 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms