RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ACOT13Q9NPJ3 140 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 HTTP42858 3142 aa12.25□□□□□ -0.45
LIG1-201ENST00000263274 CYP2A7P20853 494 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 RYKP34925 604 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 RAB15P59190 212 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 RPS3AP61247 264 aaKnown RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 SPIBQ01892 262 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 MAD2L1BPQ15013 274 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 SF3B4Q15427 424 aaKnown RBP eCLIP12.24□□□□□ -0.451e-7■■■■■ 41.2
LIG1-201ENST00000263274 KCNJ8Q15842 424 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DUOXA1Q1HG43 343 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 INO80DQ53TQ3 878 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.24□□□□□ -0.45
LIG1-201ENST00000263274 C1orf52Q8N6N3 182 aaKnown RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 SLC43A3Q8NBI5 491 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 OR5AK3PQ8NH89 298 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CEP19Q96LK0 163 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CASD1Q96PB1 797 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SIRT5Q9NXA8 310 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SCN10AQ9Y5Y9 1956 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 TNFRSF11BO00300 401 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 GAPDHSO14556 408 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 SLC16A6O15403 523 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 PCDHGA12O60330 932 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CYP7B1O75881 506 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 ANXA4P09525 319 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 SLC35A2P78381 396 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 GANABQ14697 944 aaKnown RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 MED22Q15528 200 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SYTL3Q4VX76 610 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CRTC1Q6UUV9 634 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SZRD1Q7Z422 152 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 ZSWIM9Q86XI8 627 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CMTM8Q8IZV2 173 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 C2orf73Q8N5S3 287 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 VPS37AQ8NEZ2 397 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 FEVQ99581 238 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DUSP26Q9BV47 211 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 BRD9Q9H8M2 597 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 ADPRHL2Q9NX46 363 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CFAP97Q9P2B7 532 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 LSM7Q9UK45 103 aaKnown RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 POU2F3Q9UKI9 436 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DUSP12Q9UNI6 340 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 AP3M1Q9Y2T2 418 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 YIPF1Q9Y548 306 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CEP290O15078 2479 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SOBPA7XYQ1 873 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 PQBP1O60828 265 aaKnown RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 GABARAPO95166 117 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CHRM5P08912 532 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 ACPPP15309 386 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 XPAP23025 273 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 CD70P32970 193 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 MVKQ03426 396 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 OXA1LQ15070 435 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 TIGD6Q17RP2 521 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 UAP1L1Q3KQV9 507 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DGKKQ5KSL6 1271 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CPTPQ5TA50 214 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DNASE1L2Q92874 299 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 DSN1Q9H410 356 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 MAGIXQ9H6Y5 334 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 SGK2Q9HBY8 427 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 RHCGQ9UBD6 479 aa12.24□□□□□ -0.45
LIG1-201ENST00000263274 CAB39Q9Y376 341 aaPredicted RBP12.24□□□□□ -0.45
LIG1-201ENST00000263274 KCNK5O95279 499 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 STSP08842 583 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 HMGA1P17096 107 aaKnown RBP12.23□□□□□ -0.45
LIG1-201ENST00000263274 GADD45AP24522 165 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 GABRR2P28476 465 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 NRIP1P48552 1158 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 MRPL19P49406 292 aaKnown RBP12.23□□□□□ -0.45
LIG1-201ENST00000263274 STARD3Q14849 445 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ACOX1Q15067 660 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 IER5LQ5T953 404 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ZNF605Q86T29 641 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 Q8N9G6 341 aaPredicted RBP12.23□□□□□ -0.45
LIG1-201ENST00000263274 OR6Q1Q8NGQ2 317 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 USP7Q93009 1102 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 CMTM7Q96FZ5 175 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 TSEN34Q9BSV6 310 aaKnown RBP12.23□□□□□ -0.45
LIG1-201ENST00000263274 MROQ9BYG7 248 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 RAD18Q9NS91 495 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ABCB8Q9NUT2 735 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 RNF186Q9NXI6 227 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ZDHHC3Q9NYG2 299 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 GPR83Q9NYM4 423 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 VPS29Q9UBQ0 182 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 BTBD3Q9Y2F9 522 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ANKRD36A6QL64 1941 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 PRPS1L1P21108 318 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 LIPAP38571 399 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 PREPP48147 710 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 GBX1Q14549 363 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 HIST2H2ACQ16777 129 aaPredicted RBP12.23□□□□□ -0.45
LIG1-201ENST00000263274 USP45Q70EL2 814 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 C11orf74Q86VG3 221 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 TAGAPQ8N103 731 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 TCF25Q9BQ70 676 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms