RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 RPS26P62854 115 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 NKX3-2P78367 333 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 CHIT1Q13231 466 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 DPY19L3Q6ZPD9 716 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 Q6ZVU0 165 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NEK10Q6ZWH5 1172 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ATG16L2Q8NAA4 619 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ZNF641Q96N77 438 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 FEVQ99581 238 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ABCG4Q9H172 646 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 ELOVL6Q9H5J4 265 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 C5AR2Q9P296 337 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 NDRG4Q9ULP0 352 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 YIPF1Q9Y548 306 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 OBSL1O75147 1896 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 OR6C75A6NL08 312 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 GABRR3A8MPY1 467 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 FPGTO14772 594 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 IL6P05231 212 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 HOXB8P17481 243 aaPredicted RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 RRM2P31350 389 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 GANABQ14697 944 aaKnown RBP10.34□□□□□ -0.75
USP28-201ENST00000003302 SF3B4Q15427 424 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP28-201ENST00000003302 RBFAQ8N0V3 343 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 VWCEQ96DN2 955 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 OR5M11Q96RB7 305 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 MROQ9BYG7 248 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 MUC13Q9H3R2 512 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 TMEM9Q9P0T7 183 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 RNF6Q9Y252 685 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 PCDHB7Q9Y5E2 793 aa10.34□□□□□ -0.75
USP28-201ENST00000003302 RECKO95980 971 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 SEMG1P04279 462 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 STSP08842 583 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 GSTT2P0CG29 244 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 GSTT2BP0CG30 244 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 HLA-EP13747 358 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 WEE1P30291 646 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 KDELR2P33947 212 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 KCNJ10P78508 379 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 Q6ZVL8 140 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 GPR155Q7Z3F1 870 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 OTUB1Q96FW1 271 aaPredicted RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 REXO5Q96IC2 774 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 SIGLEC11Q96RL6 698 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 HCFC1R1Q9NWW0 138 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 RETP07949 1114 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 DBTP11182 482 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 BDKRB1P46663 353 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 IDH2P48735 452 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 FKBP1BP68106 108 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 TSTA3Q13630 321 aaPredicted RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 ZMAT1Q5H9K5 638 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 STEAP3Q658P3 488 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 LHX8Q68G74 356 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 SHQ1Q6PI26 577 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 P2RY8Q86VZ1 359 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 TRMT61AQ96FX7 289 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 MED8Q96G25 268 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 HHIPQ96QV1 700 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ABCB8Q9NUT2 735 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 TYW5A2RUC4 315 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 WWP2O00308 870 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 KLHL18O94889 574 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 EBLN1P0CF75 366 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ETV3P41162 512 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 MVDP53602 400 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 BCL2L1Q07817 233 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 VMACQ2NL98 169 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CACHD1Q5VU97 1274 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 SLC8B1Q6J4K2 584 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ANGPTL8Q6UXH0 198 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 SLC5A8Q8N695 610 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CELF2-AS1Q8N7Q2 184 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 RORBQ92753 470 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 NELL1Q92832 810 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 COPS8Q99627 209 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CWH43Q9H720 699 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 IL21Q9HBE4 155 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 TBCCD1Q9NVR7 557 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 DENND4CQ5VZ89 1909 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ALPK2Q86TB3 2170 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CBFA2T3O75081 653 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 TPTEP56180 551 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CAMK2GQ13555 558 aaPredicted RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 TMEM215Q68D42 235 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CAPN13Q6MZZ7 669 aaPredicted RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 ABI3BPQ7Z7G0 1075 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ADHFE1Q8IWW8 467 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 CELF5Q8N6W0 485 aaKnown RBP10.33□□□□□ -0.76
USP28-201ENST00000003302 OR6Q1Q8NGQ2 317 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 KCNH6Q9H252 994 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 ZDHHC6Q9H6R6 413 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 C14orf119Q9NWQ9 140 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 GNPTGQ9UJJ9 305 aa10.33□□□□□ -0.76
USP28-201ENST00000003302 A8MV72 311 aaPredicted RBP10.32□□□□□ -0.76
USP28-201ENST00000003302 H3BM21 787 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 PLK4O00444 970 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 PCDH17O14917 1159 aa10.32□□□□□ -0.76
USP28-201ENST00000003302 NPPAP01160 153 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms